Mir-252-P1

MirGeneDB ID

Cte-Mir-252-P1

Family name

MIR-252 (all species)

Species

Polychaete worm (Capitella teleta)

MiRBase ID

cte-mir-252b

Paralogues

Cte-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Cbr-Mir-252-P1 Cel-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Capitella_teleta_v1.0)

CAPTEscaffold_296: 190705-190762 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-252-P1)

Mir-2001-v2 CAPTEscaffold_296: 188019-188082 [+] Ensembl
Mir-2001-v1 CAPTEscaffold_296: 188020-188081 [+] Ensembl
Mir-252-P1 CAPTEscaffold_296: 190705-190762 [+] Ensembl
Mir-252-P2 CAPTEscaffold_296: 191494-191555 [+] Ensembl

Seed

UAAGUAG

Precursor
(pre-Mir +30nt flank)

UCACUGAGCAUGCAUCUCACUGUGACAGUGCUAAGUAGUAGUGCCGCAGGUAAUACGUUAUGAUUUACCUGCACUCUGCUGCUUAACACAAGCACGCGUGAAUAACAACAUCAUAACG

Get precursor sequence

Structure

        10         20         30        40        50         
UCACUGAGCAUGCAUCU-   -|   ACA   C          UGCC       AUACGU 
                  CAC UGUG   GUG UAAGUAGUAG    GCAGGUA      \
                  GUG GCAC   CAC AUUCGUCGUC    CGUCCAU      U
GCAAUACUACAACAAUAA   C^   GAA   A          UCA-       UUAGUA 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Fe	Fe	La	La	Ma	Ma	To

Mature sequence

Cte-Mir-252-P1_5p

mirBase accession

MIMAT0009537

Sequence

0- CUAAGUAGUAGUGCCGCAGGUA -22

Get sequence

Star sequence

Cte-Mir-252-P1_3p*

mirBase accession

None

Sequence

37- CCUGCACUCUGCUGCUUAACA -58

Get sequence