Mir-252-P1

MirGeneDB ID

Spu-Mir-252-P1

Family name

MIR-252 (all species)

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-252b

Paralogues

Spu-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bfl-Mir-252-P1-v1 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Cbr-Mir-252-P1 Cel-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000015.1: 475408-475467 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-252-P1)

Mir-2001 AAGJ06000015.1: 468208-468268 [+] Ensembl
Mir-252-P1 AAGJ06000015.1: 475408-475467 [+] Ensembl
Mir-252-P2 AAGJ06000015.1: 476786-476869 [+] Ensembl

Seed

UAAGUAG

Precursor
(pre-Mir +30nt flank)

ACGUCUUCAUCUUGAGUCCACGUUGCCGAUCUAAGUAGUAGUGCCGCAGGUACUGAUUUUUAAGUGAUACCUGUACACGGCUACUUACAUUGGCAACGAGCUGGAAAAUCAACUCUUCGU

Get precursor sequence

Structure

        10        20          30        40        50          
ACGUCUUCAUCUUGAGUCCA--|         C        A   CC       CUGAUUU 
                      CGUUGCCGAU UAAGUAGU GUG  GCAGGUA       \
                      GCAACGGUUA AUUCAUCG CAC  UGUCCAU       U
UGCUUCUCAACUAAAAGGUCGA^         C        G   A-       AGUGAAU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

32	Bl	Eg	Ga	Ov	Pl	To	To

Mature sequence

Spu-Mir-252-P1_5p

mirBase accession

MIMAT0009673

Sequence

0- CUAAGUAGUAGUGCCGCAGGUA -22

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Star sequence

Spu-Mir-252-P1_3p*

mirBase accession

None

Sequence

39- CCUGUACACGGCUACUUACAU -60

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