Mir-252-P1-v2

MirGeneDB ID

Bfl-Mir-252-P1

Family name

MIR-252 (all species)

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-252b

Paralogues

Bfl-Mir-252-P1-v1 Bfl-Mir-252-P2

Orthologues

Agr-Mir-252-P1 Asu-Mir-252-P1 Bge-Mir-252-P1 Bla-Mir-252-P1-v1 Cbr-Mir-252-P1 Cel-Mir-252-P1 Csc-Mir-252-P1k Csc-Mir-252-P1l Cte-Mir-252-P1 Dan-Mir-252-P1a Dan-Mir-252-P1b Dgr-Mir-252-P1 Dlo-Mir-252-P1 Dma-Mir-252-P1 Dme-Mir-252-P1a Dme-Mir-252-P1b Dmo-Mir-252-P1a Dmo-Mir-252-P1b Dpu-Mir-252-P1 Dsi-Mir-252-P1a Dsi-Mir-252-P1b Dya-Mir-252-P1a Dya-Mir-252-P1b Eba-Mir-252-P1 Esc-Mir-252-P1 Hme-Mir-252-P1 Hmi-Mir-252-P1 Hru-Mir-252-P1 Isc-Mir-252-P1 Lan-Mir-252-P1 Lgi-Mir-252-P1 Lhy-Mir-252-P1 Llo-Mir-252-P1 Lpo-Mir-252-P1c Lpo-Mir-252-P1e Lpo-Mir-252-P1f Mgi-Mir-252-P1 Mom-Mir-252-P1 Npo-Mir-252-P1 Obi-Mir-252-P1 Ofu-Mir-252-P1 Ovu-Mir-252-P1 Pau-Mir-252-P1 Pca-Mir-252-P1 Pdu-Mir-252-P1 Pfl-Mir-252-P1 Pmi-Mir-252-P1 Rph-Mir-252-P1 Sko-Mir-252-P1 Snu-Mir-252-P1 Spu-Mir-252-P1 Sro-Mir-252-P1o1 Sro-Mir-252-P1o2 Tca-Mir-252-P1 Tur-Mir-252-P1 War-Mir-252-P1 Xbo-Mir-252-P1g Xbo-Mir-252-P1h Xbo-Mir-252-P1i Xbo-Mir-252-P1j

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049982.1: 20093381-20093449 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-252-P1-v2)

Mir-252-P2 NC_049982.1: 20092666-20092725 [-] UCSC
Mir-252-P1-v2 NC_049982.1: 20093381-20093449 [-] UCSC
Mir-252-P1-v1 NC_049982.1: 20093383-20093447 [-] UCSC

Variant

Bfl-Mir-252-P1-v2

Seed

GCUAAGU

Precursor
(pre-Mir +30nt flank)

AGUAGUUUGAGAUGAAAGCGACUGUCUCUGUGCUAAGUAGUACUGCCGCAGGGAGUGCUGUGGACUGAUUCUAUCCCCUGCGCAGUCCUACUUACAACAGGGAACAUUUCUAAUGCUUCAAACUUCACC

Get precursor sequence

Structure

        10        20          30        40        50        60    
AGUAGUUUGAGAUGAAAGCGAC-  -|      GC       U     C      AGUGCUGUGG 
                       UG UCUCUGU  UAAGUAG ACUGC GCAGGG          A
                       AC AGGGACA  AUUCAUC UGACG CGUCCC          C
CCACUUCAAACUUCGUAAUCUUU  A^      AC       C     -      CUAUCUUAGU 
       120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Bfl-Mir-252-P1-v2_5p

mirBase accession

MIMAT0009499

Sequence

0- UGCUAAGUAGUACUGCCGCAGGGA -24

Get sequence

Star sequence

Bfl-Mir-252-P1-v2_3p* (predicted)