MirGeneDB 2.1

MirGeneDB ID

Dpu-Mir-252-P2-v1

Family name MIR-252 (all species)
Seed AAGUACU
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-252a
Paralogues Dpu-Mir-252-P1  Dpu-Mir-252-P2-v2 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Cgi-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Npo-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_285: 66067-66133 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2-v1)
Mir-252-P2-v2 DAPPUscaffold_285: 66066-66133 [+] Ensembl
Mir-252-P2-v1 DAPPUscaffold_285: 66067-66133 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAUUUAAAGAUGAUUCCUACCCCGUUCCUAAGUACUCGUGCCGCAGGAGAGAUGUAUUAAUCUGCAAGUUCCUCCUGCUGCUCAAGUUCUUAACCAAUGGGUGGGAGAAACCUCCAAAUUGUAAU
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Structure
        10           20        30        40        50        60  
CUUAUUUAAAGAUGAUU---|      CGUUCC    U   CGU  C       AGAUGUAUUA 
                    CCUACCC      UAAG ACU   GC GCAGGAG          A
                    GGGUGGG      AUUC UGA   CG CGUCCUC          U
UAAUGUUAAACCUCCAAAGA^      UAACCA    U   ACU  U       CUUGAACGUC 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dpu-Mir-252-P2-v1_5p

mirBase accessionMIMAT0012647
Sequence
0- UAAGUACUCGUGCCGCAGGAG -21
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Star sequence

Dpu-Mir-252-P2-v1_3p*

mirBase accessionNone
Sequence
45- CCUGCUGCUCAAGUUCUUAACC -67
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