MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-252
Paralogues Cbr-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cel-Mir-252-P2  Cgi-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Npo-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CB4)
II: 8309594-8309659 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUAUUCCAACCGAGGUCUCUCCCAGUUAUAAGUAGUAGUGCCGCAGGUAACCGCUUCCAGAAAAUUGGUUUACCUACUGCCUUCUGCUUAGAAUUGGGAUUUUGAUGACCGUCUAUAAUAAUA
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Structure
        10        20          30        40        50        60   
UUCCUAUUCCAACCGAGGUCUC--|       A       U  U  CGC      CCGCUUCCA 
                        UCCCAGUU UAAGUAG AG GC   AGGUAA         \
                        AGGGUUAA AUUCGUC UC CG   UCCAUU         G
AUAAUAAUAUCUGCCAGUAGUUUU^       G       U  -  UCA      UGGUUAAAA 
    120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-252-P2_5p

mirBase accessionMIMAT0000507
Sequence
0- AUAAGUAGUAGUGCCGCAGGUAA -23
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Star sequence

Cbr-Mir-252-P2_3p*

mirBase accessionNone
Sequence
44- ACCUACUGCCUUCUGCUUAGAA -66
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