Mir-96-P1

MirGeneDB ID

Isc-Mir-96-P1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Deer tick (Ixodes scapularis)

MiRBase ID

isc-mir-96

Paralogues

Isc-Mir-96-P2 Isc-Mir-96-P3

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cgi-Mir-96-P1h Cgi-Mir-96-P1i Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dno-Mir-96-P1 Dre-Mir-96-P1a Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Efe-Mir-96-P1 Esc-Mir-96-P1h Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Hsa-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1r-v2 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ovu-Mir-96-P1h Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(IscaWI)

DS633978: 113225-113285 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1)

Mir-96-P3 DS633978: 93562-93624 [+] Ensembl
Mir-96-P1 DS633978: 113225-113285 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGCCGCCUGUCAAACUCGCCUUCCGUUUUUUGGCACUAGCACAUUUUUGUGUUUCGAUGCUACGACAAAAAUUGUGGUAGUGUCAAGCAAUAGGAAGAGUCUGCAAUGCGACCGAAAGA

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Structure

        10        20          30        40         50         
CCCGCCGCCUGUCAAACUC  -     -   U          G   -|       GUUUCG 
                   GC CUUCC GUU UUUGGCACUA CAC AUUUUUGU      A
                   UG GAAGG UAA GAACUGUGAU GUG UAAAAACA      U
AGAAAGCCAGCGUAACGUC  A     A   C          G   U^       GCAUCG 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Al	Mi	Mi	Mi	Sa	Sa	Sa	Sa	To

Mature sequence

Isc-Mir-96-P1_5p

mirBase accession

MIMAT0012708

Sequence

0- UUUGGCACUAGCACAUUUUUGU -22

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Co-mature sequence

Isc-Mir-96-P1_3p

mirBase accession

None

Sequence

38- AAAAAUUGUGGUAGUGUCAAGCA -61

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