MirGeneDB ID | Mgi-Mir-96-P1h |
Family name |
MIR-96 (all species) |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-96-P1i
Mgi-Mir-96-P2l
Mgi-Mir-96-P2m
Mgi-Mir-96-P3
|
Orthologues |
Agr-Mir-96-P1h
Ami-Mir-96-P1
Ava-Mir-96-o1
Bfl-Mir-96-P1
Bla-Mir-96-P1
Bta-Mir-96-P1
Cfa-Mir-96-P1
Cin-Mir-96-P1
Cja-Mir-96-P1
Cli-Mir-96-P1
Cmi-Mir-96-P1
Cpi-Mir-96-P1
Cpo-Mir-96-P1
Cte-Mir-96-P1
Dno-Mir-96-P1
Eba-Mir-96-P1
Eca-Mir-96-P1
Efe-Mir-96-P1
Egr-Mir-96-P1
Ete-Mir-96-P1
Gga-Mir-96-P1
Gja-Mir-96-P1
Hru-Mir-96-P1h
Hsa-Mir-96-P1
Isc-Mir-96-P1
Laf-Mir-96-P1
Lan-Mir-96-P1
Lch-Mir-96-P1
Lgi-Mir-96-P1h
Lhy-Mir-96-P1
Llo-Mir-96-P1
Loc-Mir-96-P1
Mdo-Mir-96-P1
Mml-Mir-96-P1
Mmr-Mir-96-P1
Mmu-Mir-96-P1
Mom-Mir-96-P1h
Mun-Mir-96-P1
Neu-Mir-96-P1
Npo-Mir-96-P1h
Oan-Mir-96-P1
Ocu-Mir-96-P1
Pab-Mir-96-P1
Pau-Mir-96-P1
Pbv-Mir-96-P1
Pca-Mir-96-P1
Pcr-Mir-96-P1
Pfl-Mir-96-P1
Pmi-Mir-96-P1
Pve-Mir-96-P1h
Rno-Mir-96-P1
Rph-Mir-96-P1h
Sha-Mir-96-P1
Sko-Mir-96-P1
Sma-Mir-96-P1
Snu-Mir-96-P1
Spt-Mir-96-P1
Spu-Mir-96-P1
Sro-Mir-96-P1
Sto-Mir-96-P1
Tgu-Mir-96-P1
War-Mir-96-P1
Xbo-Mir-96-P1
Xtr-Mir-96-P1
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold591: 1189388-1189446 [-]
Ensembl
|
Seed |
UUGGCAC |
Precursor (pre-Mir +30nt flank) |
UCUGAGCGGAAGUAUUUCCUGUUGGUCGUUCUUGGCACUGGCGGAAUAAUCACGUGACAAGUAAAGUGGUUGUUCCCUUGUGUCAAUAAUGAACUCACGGAGUGUCGCCUAGUUCUAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGAGCGGAAGUAUUUC- U -| C U C GUGAC
CUGU GG UCGUU UUGGCAC GG GGAAUAAUCAC A
GGCA UC AGUAA AACUGUG UC CCUUGUUGGUG A
GUAUCUUGAUCCGCUGUGA C A^ U U - AAAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-96-P1h_5p |
mirBase accession | None |
Sequence |
0- CUUGGCACUGGCGGAAUAAUCAC -23
Get sequence
|
Star sequence |
Mgi-Mir-96-P1h_3p* |
mirBase accession | None |
Sequence |
37- GGUUGUUCCCUUGUGUCAAUAA -59
Get sequence
|