Mir-96-P2l

MirGeneDB ID

Mgi-Mir-96-P2l

Family name

MIR-96 (all species)

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-96-P1h Mgi-Mir-96-P1i Mgi-Mir-96-P2m Mgi-Mir-96-P3

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

C. gigas

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold626: 26567-26631 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2l)

Mir-96-P3 scaffold626: 18351-18408 [+] Ensembl
Mir-96-P2l scaffold626: 26567-26631 [+] Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

ACUGAGAGUUGGGGUUAAAAGCGUGCAGAUCUUGGCACUUGUAGAAUUCACUGAUACUUGAAUAUUUAAUCUCAGUGAAUCUAUAGUGGCAACCGCGGCACGCUACUCUGAACAUCGUGGGAGCA

Get precursor sequence

Structure

        10          20        30        40        50        60   
ACUGAGAGUUGGGGUUAAA--|      AGAUC   G    U     A        UACUUGAA 
                     AGCGUGC     UUG CACU GUAGA UUCACUGA        \
                     UCGCACG     AAC GUGA UAUCU AAGUGACU        U
ACGAGGGUGCUACAAGUCUCA^      GCGCC   G    -     -        CUAAUUUA 
   120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Mature sequence

Mgi-Mir-96-P2l_5p

mirBase accession

None

Sequence

0- CUUGGCACUUGUAGAAUUCACUGA -24

Get sequence

Star sequence

Mgi-Mir-96-P2l_3p*

mirBase accession

None

Sequence

43- AGUGAAUCUAUAGUGGCAACCG -65

Get sequence