MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-96-P1i

Family name MIR-96 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-96-P1h  Mgi-Mir-96-P2l  Mgi-Mir-96-P2m  Mgi-Mir-96-P3 
Orthologues Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Pve-Mir-96-P1i  Rno-Mir-96-P1  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold77: 200772-200830 [+] Ensembl
Seed UUUGGCA
Precursor
(pre-Mir +30nt flank)		 
UUGAAUCCACGCAGAUUUCGUCAGCAUUUCAUUUGGCACUUGUGGAAUAAUCGUUAAGUUUACAAAGAUUAUACAUUGGUGCCAAGUAAUCUGUGACGUCAUGGCACCUGAGGUUAAAA
Get precursor sequence
Structure
        10           20        30        40        50         
UUGAAUCCACGCAGAUUU---|    G  UUUC          U   GA      GUUAAG 
                     CGUCA CA    AUUUGGCACU GUG  AUAAUC      U
                     GCAGU GU    UGAACCGUGG UAC  UAUUAG      U
AAAAUUGGAGUCCACGGUACU^    -  CUAA          U   A-      AAACAU 
       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-96-P1i_5p
mirBase accessionNone
Sequence 
0- AUUUGGCACUUGUGGAAUAAUCG -23
Get sequence
Star sequence

Mgi-Mir-96-P1i_3p*
mirBase accessionNone
Sequence 
37- AUUAUACAUUGGUGCCAAGUAA -59
Get sequence