MirGeneDB 2.1
MirGeneDB ID

Spt-Mir-96-P1

Family name MIR-96 (all species)
Seed UUGGCAC
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-96-P2  Spt-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cgi-Mir-96-P1h  Cgi-Mir-96-P1i  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1a  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Efe-Mir-96-P1  Esc-Mir-96-P1h  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1r-v2  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1h  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01000343.1: 788151-788214 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGGAAUCCAGUCCCUCCGCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUUGUGCGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGAAGAGAUGGGGAUGGCACCGUUGGCCU
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Structure
        10         20         30        40        50        60  
CUGGGAAUCCAGUCCCU-   -|   G     U         G     UU     UUUGUGCG 
                  CCG CUUU CCCAU UUGGCACUA CACAU  UUGCU        \
                  GGU GAGA GGGUA AACCGUGAU GUGUA  AACGA        U
UCCGGUUGCCACGGUAGG   A^   A     U         -     UU     GUUUCAUA 
  120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Spt-Mir-96-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Spt-Mir-96-P1_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAAUUAUGUGUAGUGCCAAUAU -64
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