MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-96-P1x

Family name MIR-96 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-96-P1v  Pdu-Mir-96-P1w  Pdu-Mir-96-P2  Pdu-Mir-96-P3 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Bilateria
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000039.1: 3780734-3780790 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1x)		 Mir-96-P1x JAPTHN010000039.1: 3780734-3780790 [-] Ensembl
Mir-96-P1w JAPTHN010000039.1: 3782469-3782528 [-] Ensembl
Seed UUUGGCA
Precursor
(pre-Mir +30nt flank)		 
AAAUAAUUUGCGACCGUGGCUCCUCGUGGUAUUUGGCACGAGUGGAAUAUUCGUAUCUCUCACCGGUUAUCCACCUGUGCCAUAUAAUGUGUCGGGCCUGAACUUCAAGUCAAAAUG
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Structure
        10          20        30        40        50        
AAAUAAUUUGCGACCGU--|    CU  UGG   U       A     A  UU  UAUC 
                   GGCUC  CG   UAU UGGCACG GUGGA UA  CG    U
                   CCGGG  GU   AUA ACCGUGU CACCU AU  GC    C
GUAAAACUGAACUUCAAGU^    CU  GUA   U       C     -  UG  CACU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-96-P1x_5p
mirBase accessionNone
Sequence 
0- AUUUGGCACGAGUGGAAUAUUCG -23
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Star sequence

Pdu-Mir-96-P1x_3p*
mirBase accessionNone
Sequence 
35- GUUAUCCACCUGUGCCAUAUAA -57
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