Mir-96-P1

MirGeneDB ID

Sma-Mir-96-P1

Family name

MIR-96 (all species)

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-96

Paralogues

Orthologues

Agr-Mir-96-P1h Agr-Mir-96-P1i Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dgr-Mir-96-P1m Dgr-Mir-96-P1n Dno-Mir-96-P1 Dre-Mir-96-P1a Eba-Mir-96-P1 Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Esc-Mir-96-P1i Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Gsa-Mir-96-P1y Gsa-Mir-96-P1z Hmi-Mir-96-P1l1 Hmi-Mir-96-P1l2 Hru-Mir-96-P1h Hru-Mir-96-P1i Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mgi-Mir-96-P1h Mgi-Mir-96-P1i Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mom-Mir-96-P1h Mom-Mir-96-P1i Mun-Mir-96-P1 Neu-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ofu-Mir-96-P1p Ofu-Mir-96-P1q Ovu-Mir-96-P1i Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pdu-Mir-96-P1v Pdu-Mir-96-P1w Pdu-Mir-96-P1x Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Pve-Mir-96-P1h Pve-Mir-96-P1i Rno-Mir-96-P1 Rph-Mir-96-P1h Rph-Mir-96-P1i Sha-Mir-96-P1 Sko-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b War-Mir-96-P1 Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_000237925.5_SM_V9_genomic)

OU426848.1: 15420153-15420208 [-] UCSC Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

UCUUAAGGUACCAUGUACGAAUGGGUCCAACUUGGCACUUUGGAAUUGUCACAAGGUAAAUUGUGACAGUUACCAGGUGCCAAACCGGUCAAUUCGCUAGGCAUCAUAGCAUCUAC

Get precursor sequence

Structure

        10           20        30        40         50       
UCUUAAGGUACCAUGUA---|    G  U  AAC         U  -          AGG 
                    CGAAU GG CC   UUGGCACUU GG AAUUGUCACA   U
                    GCUUA CU GG   AACCGUGGA CC UUGACAGUGU   A
CAUCUACGAUACUACGGAUC^    A  -  CCA         -  A          UAA 
    110       100        90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ce	Ce	Ce	Eg	Eg	Eg	Eg	Eg	Eg	Mi	Mi	Sc	Sc	Sc	Sm	Sm	Sp	Sp	Sp

Mature sequence

Sma-Mir-96-P1_5p

mirBase accession

MIMAT0033635

Sequence

0- CUUGGCACUUUGGAAUUGUCACA -23

Get sequence

Star sequence

Sma-Mir-96-P1_3p* (predicted)

mirBase accession

MIMAT0033636

Sequence

33- UGACAGUUACCAGGUGCCAAACC -56

Get sequence