Mir-96-P1f

MirGeneDB ID

Ebu-Mir-96-P1f

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-96-P1e Ebu-Mir-96-P1g Ebu-Mir-96-P2e Ebu-Mir-96-P3e Ebu-Mir-96-P3f

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02009661.1: 1087770-1087831 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUGUGGUUUUUCUCCUCUGUCUGACCUCGUUUGGCACUUGCACAUACUUGCUAACAAGGCCAAUCUCAGCAGCUAUGUCACGUGCCAGGCAAGGCAGCCAGAAUUGCCAUCUUGGUGCGAG

Get precursor sequence

Structure

        10           20        30        40        50        60 
AUUGUGGUUUUUCUCCU---|  U   A   C         U  C     C     AACAAGG 
                    CUG CUG CCU GUUUGGCAC UG ACAUA UUGCU       \
                    GAC GAC GGA CGGACCGUG AC UGUAU GACGA       C
GAGCGUGGUUCUACCGUUAA^  C   -   A         C  -     C     CUCUAAC 
120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ebu-Mir-96-P1f_5p

mirBase accession

None

Sequence

0- UUUGGCACUUGCACAUACUUGCU -23

Get sequence

Star sequence

Ebu-Mir-96-P1f_3p* (predicted)

mirBase accession

None

Sequence

40- CAGCUAUGUCACGUGCCAGGCA -62

Get sequence