MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-96-P3e

Family name MIR-96 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Ebu-Mir-96-P2e  Ebu-Mir-96-P3f 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tur-Mir-96-P3  War-Mir-96-P3  Xtr-Mir-96-P3-v1 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02009823.1: 3458408-3458467 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3e)		 Mir-96-P2e FYBX02009823.1: 3449100-3449160 [-] UCSC Ensembl
Mir-96-P1e FYBX02009823.1: 3449915-3449976 [-] UCSC Ensembl
Mir-96-P3e FYBX02009823.1: 3458408-3458467 [-] UCSC Ensembl
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
GUUGCGAGAGUGAUGCACGUCUGCGCCAUGAAUGGCACUGGUAGAAUUCACUGCGCGCUCUGCUCCAGUGAAUCGCCUUGGAGCCAUACAUGGCGAAGGCACAAAGCUUCAACUGCACUA
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Structure
        10          20        30          40        50         
GUUGCGAGAGUGAUGCAC--    G       A     A  --|  A  A       CGCGC 
                    GUCU CGCCAUG AUGGC CU  GGU GA UUCACUG     U
                    CGGA GCGGUAC UACCG GG  CCG CU AAGUGAC     C
AUCACGUCAACUUCGAAACA    A       A     A  UU^  -  -       CUCGU 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ebu-Mir-96-P3e_5p
mirBase accessionNone
Sequence 
0- AAUGGCACUGGUAGAAUUCACUG -23
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Star sequence

Ebu-Mir-96-P3e_3p* (predicted)
mirBase accessionNone
Sequence 
37- GUGAAUCGCCUUGGAGCCAUACA -60
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