MirGeneDB 2.1
MirGeneDB ID

Ebu-Mir-96-P3e

Family name MIR-96 (all species)
Seed AUGGCAC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Ebu-Mir-96-P2e  Ebu-Mir-96-P3f 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02009823.1: 3458408-3458467 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGCGAGAGUGAUGCACGUCUGCGCCAUGAAUGGCACUGGUAGAAUUCACUGCGCGCUCUGCUCCAGUGAAUCGCCUUGGAGCCAUACAUGGCGAAGGCACAAAGCUUCAACUGCACUA
Get precursor sequence
Structure
        10          20        30          40        50         
GUUGCGAGAGUGAUGCAC--    G       A     A  --|  A  A       CGCGC 
                    GUCU CGCCAUG AUGGC CU  GGU GA UUCACUG     U
                    CGGA GCGGUAC UACCG GG  CCG CU AAGUGAC     C
AUCACGUCAACUUCGAAACA    A       A     A  UU^  -  -       CUCGU 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ebu-Mir-96-P3e_5p
mirBase accessionNone
Sequence 
0- AAUGGCACUGGUAGAAUUCACUG -23
Get sequence
Star sequence

Ebu-Mir-96-P3e_3p* (predicted)
mirBase accessionNone
Sequence 
37- GUGAAUCGCCUUGGAGCCAUACA -60
Get sequence