MirGeneDB

MirGeneDB ID

Xtr-Mir-96-P3-v1

Family name MIR-96 (all species)
Seed AUGGCAC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-183
Paralogues Xtr-Mir-96-P1  Xtr-Mir-96-P2  Xtr-Mir-96-P3-v2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(xenTro7)
KB021651: 115446732-115446793 [+] UCSC
Clustered MiRNAs
(< 10kb from Mir-96-P3-v1)
Mir-96-P3-v1 KB021651: 115446732-115446793 [+] UCSC
Mir-96-P3-v2 KB021651: 115446733-115446792 [+] UCSC
Mir-96-P1 KB021651: 115447888-115447951 [+] UCSC
Mir-96-P2 KB021651: 115451533-115451597 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGAACACGU
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Structure
        10         20         30          40        50        60
UCGCUGGGUGAGCAUCCC-  -         G      AC--|    GA       GUGAAAA 
                   UC CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                   AG GACGAGACA AUACCG    ACCAU  UAAGUGA       A
UGCACAAGAACACCAAGAA  A         A      GGAU^    --       CUAAAAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-96-P3-v1_5p

MirBase accessionMIMAT0003612
Sequence
0- UAUGGCACUGGUAGAAUUCACU -22
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Validated targets TargetScanVert: xtr-miR-183
Star sequence

Xtr-Mir-96-P3-v1_3p*

MirBase accessionNone
Sequence
40- UGAAUUACCAUAGGGCCAUAAA -62
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