Mir-96-P3t

MirGeneDB ID

Lpo-Mir-96-P3t

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Lpo-Mir-96-P2r Lpo-Mir-96-P2s-v1 Lpo-Mir-96-P2t-v1 Lpo-Mir-96-P2u Lpo-Mir-96-P2v-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3u Lpo-Mir-96-P3v

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665634.1: 1441897-1441956 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3t)

Mir-96-P3t NW_013665634.1: 1441897-1441956 [+] Ensembl
Mir-96-P2t-v1 NW_013665634.1: 1447496-1447554 [+] Ensembl
Mir-96-P2t-v2 NW_013665634.1: 1447497-1447553 [+] Ensembl
Mir-96-P1t NW_013665634.1: 1448182-1448242 [+] Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

AACCACCUGCGAAUUUUGGUUGUUUCUCUUAAUGGCACUGGAAGAAUUCACGGCUUAUGUUCAAAUCCGUGAAUUCUCUAGUGUUAUGAAGAGUGGCGAUAUAUCUCAACAUACUAAAAC

Get precursor sequence

Structure

        10          20        30        40        50          
AACCACCUGCGAAUUUUG--|    UU     A           A          CUUAUG 
                    GUUGU  CUCUU AUGGCACUGGA GAAUUCACGG      \
                    UAGCG  GAGAA UAUUGUGAUCU CUUAAGUGCC      U
CAAAAUCAUACAACUCUAUA^    GU     G           -          UAAACU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-96-P3t_5p

mirBase accession

None

Sequence

0- AAUGGCACUGGAAGAAUUCACGG -23

Get sequence

Star sequence

Lpo-Mir-96-P3t_3p* (predicted)

mirBase accession

None

Sequence

38- GUGAAUUCUCUAGUGUUAUGAA -60

Get sequence