MirGeneDB

MirGeneDB ID

Dpu-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-263a
Paralogues Dpu-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Daphnia_pulex.V1.0)
DAPPUscaffold_87: 475620-475711 [+] Ensembl
Clustered MiRNAs
(< 10kb from Mir-96-P3)
Mir-96-P3 DAPPUscaffold_87: 475620-475711 [+] Ensembl
Mir-96-P2 DAPPUscaffold_87: 475817-475879 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUGUCGGUUGUUGUUGGCCGAUUCCCGCAAUGGCACUGGAAGAAUUCACGGGUCGCAAUUAAAUUUGACAGAUUUGAAUUUCUGGAAAAUGACACACUCGUGGAUCUUCAGUGCUGUACCGGGCGUCGGUUAUUCCAUCUUCUACUUAUC
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Structure
        10          20        30        40        50        60        70      
AUAUGUCGGUUGUUGUU--|      U    CA         G    A        UCGCAAUUAAAUUUGACAGAU 
                   GGCCGAU CCCG  AUGGCACUG AAGA UUCACGGG                     U
                   UUGGCUG GGGC  UGUCGUGAC UUCU AGGUGCUC                     U
CUAUUCAUCUUCUACCUUA^      C    CA         -    -        ACACAGUAAAAGGUCUUUAAG 
150       140       130       120        110        100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dpu-Mir-96-P3_5p

MirBase accessionMIMAT0012649
Sequence
0- AAUGGCACUGGAAGAAUUCACGGG -24
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Star sequence

Dpu-Mir-96-P3_3p*

MirBase accessionNone
Sequence
70- CGUGGAUCUUCAGUGCUGUACC -92
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