Mir-96-P3a

MirGeneDB ID

Tni-Mir-96-P3a

Family name

MIR-96 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-183

Paralogues

Tni-Mir-96-P1a Tni-Mir-96-P1b Tni-Mir-96-P2a Tni-Mir-96-P2b Tni-Mir-96-P3b

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gmo-Mir-96-P3a-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mal-Mir-96-P3a-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

19: 3385640-3385701 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3a)

Mir-96-P2a 19: 3385158-3385222 [-] UCSC Ensembl
Mir-96-P1a 19: 3385392-3385455 [-] UCSC Ensembl
Mir-96-P3a 19: 3385640-3385701 [-] UCSC Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

CGGUGGCGUGAUACUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAGAGCUCACUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACUUGAUAAUGG

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Structure

        10           20        30          40        50        60
CGGUGGCGUGAUACUGA---  C         G      AC--|    GA       GUGAGAG 
                    CU CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                    GA GACGAGACA AUACCG    ACCAU  UAAGUGA       U
GGUAAUAGUUCACCAAGAAA  -         A      GGAU^    --       CUAUCAC 
120       110        100        90        80          70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-96-P3a_5p

mirBase accession

MIMAT0003090

Sequence

0- UAUGGCACUGGUAGAAUUCACU -22

Get sequence

Star sequence

Tni-Mir-96-P3a_3p* (predicted)

mirBase accession

None

Sequence

40- UGAAUUACCAUAGGGCCAUAAA -62

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