MirGeneDB

MirGeneDB ID

Pfl-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-96-P1  Pfl-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD345584.1: 199276-199339 [-]
Precursor
(pre-Mir +30nt flank)
UGGCUUUGCUUGGCUUUGCUUUGCAUUGUGUAUGGCACUAUAGAAUUCACUGCCGAUCAAGCUCUCUGUCCAGUGGAAUCAAUGGUGCCAUGCACAAAGCUAAGAGCUUUACAUCCCUGCAAUA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGCUUUGCUUGGCUUUG--|  U  A                A  A       CCGAUCAA 
                    CUU GC UUGUGUAUGGCACUAU GA UUCACUG        G
                    GAA CG AACACGUACCGUGGUA CU AGGUGAC        C
AUAACGUCCCUACAUUUCGA^  U  A                A  A       CUGUCUCU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Pt
Mature sequence

Pfl-Mir-96-P3_5p

MirBase accessionNone
Sequence
0- UAUGGCACUAUAGAAUUCACUG -22
Get sequence
Star sequence

Pfl-Mir-96-P3_3p* (predicted)

MirBase accessionNone
Sequence
42- GUGGAAUCAAUGGUGCCAUGCA -64
Get sequence