Mir-96-P3

MirGeneDB ID

Dma-Mir-96-P3

Family name

MIR-96 (all species)

Species

Large common water flea (Daphnia magna)

MiRBase ID

Paralogues

Dma-Mir-96-P2-v1

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gmo-Mir-96-P3a-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3b-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(DMA_ASM399081)

NC_046180.1: 10114339-10114567 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P2-v1 NC_046180.1: 10114057-10114119 [-] Ensembl
Mir-96-P2-v2 NC_046180.1: 10114058-10114118 [-] Ensembl
Mir-96-P3 NC_046180.1: 10114339-10114567 [-] Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

UGUUGUCAUUUGUUCUUGAUCAAUUCCCGUAAUGGCACUGGAAGAAUUCACGGGUUGCAUUUUUGUGUCAAUGAUUGGAAUUUGGUUUUGAUGGAGUCAAAAGAAGAGGCCGGAAGGAGUUUUUAUUUAUUUAUUUAUUUAUUUUUUUUUUAUUAUUAUUAUUACUUACUUCCAUUGAGGCCUCGCUUUAUUCUUUGUCUCUGAUCAAUUCUUUUCCAAUCUGAAAACAUUGAUACUCGUGGAUCUUCAGUGCUGUACCGGGCGUUGGUUUCUUGUCGUCUGCUGCGAU

Get precursor sequence

Structure

        10          20        30        40        50        60        70        80        90       100       110       120       130       140     
UGUUGUCAUUUGUUCUU--|      U    UA         G    A        UUGCAUUUUUGUGUCAAUGAUUGGAAUUUGGUUUUGAUGGAGUCAAAAGAAGAGGCCGGAAGGAGUUUUUAUUUAUUUAUUUAUUUAUUU 
                   GAUCAAU CCCG  AUGGCACUG AAGA UUCACGGG                                                                                          \
                   UUGGUUG GGGC  UGUCGUGAC UUCU AGGUGCUC                                                                                          U
UAGCGUCGUCUGCUGUUCU^      C    CA         -    -        AUAGUUACAAAAGUCUAACCUUUUCUUAACUAGUCUCUGUUUCUUAUUUCGCUCCGGAGUUACCUUCAUUCAUUAUUAUUAUUAUUUUUU 
       280       270       260       250         240       230       220       210       200       190       180       170       160       150

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14

Mature sequence

Dma-Mir-96-P3_5p

mirBase accession

None

Sequence

0- AAUGGCACUGGAAGAAUUCACGGG -24

Get sequence

Star sequence

Dma-Mir-96-P3_3p*

mirBase accession

None

Sequence

207- CGUGGAUCUUCAGUGCUGUACC -229

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