MirGeneDB

MirGeneDB ID

Lan-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-96-P1  Lan-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(LinAna_1.0)
LFEI01000342: 92452-92511 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCGCUUGUGCUUUUAUCUGUCUGUCCACCAAUGGCACUGGUAGAAUUCACGGUUGCUAUGGAAACCCGUGGGUUUUCCGGUGCCAUACGUGGAUUGAUGCUUCUUGCUUCCUUGCCGCU
Get precursor sequence
Structure
        10          20        30        40        50          
UCCGCUUGUGCUUUUAUCU--|  U      CA          U           UUGCUA 
                     GUC GUCCAC  AUGGCACUGG AGAAUUCACGG      \
                     UAG UAGGUG  UACCGUGGCC UUUUGGGUGCC      U
UCGCCGUUCCUUCGUUCUUCG^  U      CA          -           CAAAGG 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To
Mature sequence

Lan-Mir-96-P3_5p

MirBase accessionNone
Sequence
0- AAUGGCACUGGUAGAAUUCACGG -23
Get sequence
Star sequence

Lan-Mir-96-P3_3p* (predicted)

MirBase accessionNone
Sequence
38- GUGGGUUUUCCGGUGCCAUACG -60
Get sequence