MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-96-P3b-v1

Family name MIR-96 (all species)
Seed AUGGCAC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mal-Mir-96-P2a  Mal-Mir-96-P2b  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mal-Mir-96-P3b-v2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3b  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884693.1: 180999-181060 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAACCACUUAUAUCUCCUCCUAUUCUGUGUAUGGCACUGGUAGAAUUCACUGUCACAGCAGGACAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGUAGAGACAGAUCCACACUGCCCGUG
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Structure
        10           20        30          40        50        60
GGAACCACUUAUAUCUC---  C         G      AC--|    GA       GUCACAG 
                    CU CUAUUCUGU UAUGGC    UGGUA  AUUCACU       C
                    GA GAUGAGACA AUACCG    ACCAU  UAAGUGA       A
GUGCCCGUCACACCUAGACA  -         A      GGAU^    --       CUACAGG 
120       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-96-P3b-v1_5p

mirBase accessionNone
Sequence
0- UAUGGCACUGGUAGAAUUCACU -22
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Star sequence

Mal-Mir-96-P3b-v1_3p*

mirBase accessionNone
Sequence
40- UGAAUUACCAUAGGGCCAUAAA -62
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