MirGeneDB

MirGeneDB ID

Cin-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-183
Paralogues Cin-Mir-96-P1  Cin-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ci3)
HT000094.1: 543640-543692 [-] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-96-P3)
Mir-96-P2 HT000094.1: 542170-542234 [-] UCSC Ensembl
Mir-96-P1 HT000094.1: 542651-542705 [-] UCSC Ensembl
Mir-96-P3 HT000094.1: 543640-543692 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAAAACCUCCCGACUCUGGUGUUUUCGGUGUAUGGCACUGGUAGAAUUCACUGCCAAGCCAGUGGUUCAACAAGCGCCGUAAGCUGGAAACACUACUUUCUGCAGUGAUGACC
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Structure
        10          20        30        40        50      
UAAAACCUCCCGACUCU--|           G      A  G  A    U    GCC 
                   GGUGUUUUCGGU UAUGGC CU GU GAAU CACU   A
                   UCACAAAGGUCG AUGCCG GA CA CUUG GUGA   A
CCAGUAGUGACGUCUUUCA^           A      C  A  A    -    CCG 
 110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Mir-96-P3_5p

MirBase accessionMIMAT0006107
Sequence
0- UAUGGCACUGGUAGAAUUCACU -22
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Star sequence

Cin-Mir-96-P3_3p*

MirBase accessionMIMAT0015262
Sequence
31- GUGGUUCAACAAGCGCCGUAAG -53
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