MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-96-P3-v1

Family name MIR-96 (all species)
Seed AUGGCAC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-183
Paralogues Cfa-Mir-96-P1  Cfa-Mir-96-P2  Cfa-Mir-96-P3-v2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Csc-Mir-96-P3w  Csc-Mir-96-P3x  Dan-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dre-Mir-96-P3a-v2  Dsi-Mir-96-P3  Dya-Mir-96-P3  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Gmo-Mir-96-P3a-v1  Gmo-Mir-96-P3a-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mal-Mir-96-P3b-v1  Mal-Mir-96-P3b-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pfl-Mir-96-P3  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tni-Mir-96-P3b  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3c-v2  Xla-Mir-96-P3d-v1  Xla-Mir-96-P3d-v2  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr14: 7068542-7068603 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3-v1)
Mir-96-P3-v1 chr14: 7068542-7068603 [+] UCSC Ensembl
Mir-96-P3-v2 chr14: 7068543-7068602 [+] UCSC Ensembl
Mir-96-P1 chr14: 7068767-7068830 [+] UCSC Ensembl
Mir-96-P2 chr14: 7072722-7072786 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGGCCGAGAGCGUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCGGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGUGUCUCG
Get precursor sequence
Structure
        10           20        30          40        50        60
GCGGGCCGAGAGCGUGA---  C         G      AC--|    GA       GUGAACA 
                    CU CUGUUCUGU UAUGGC    UGGUA  AUUCACU       G
                    GA GACGAGACA AUACCG    GCCAU  UAAGUGA       U
GCUCUGUGAGCGCCUAGACA  -         A      GGAA^    --       CUGGCUC 
120       110        100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-96-P3-v1_5p

mirBase accessionMIMAT0006621
Sequence
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-183
miRDB: MIMAT0006621
Star sequence

Cfa-Mir-96-P3-v1_3p*

mirBase accessionNone
Sequence
40- UGAAUUACCGAAGGGCCAUAAA -62
Get sequence