Mir-96-P3

MirGeneDB ID

Sko-Mir-96-P3

Family name

MIR-96 (all species)

Seed

AUGGCAC

Species

Saccoglossus (Saccoglossus kowalevskii)

MiRBase ID

sko-mir-183

Paralogues

Sko-Mir-96-P1 Sko-Mir-96-P2

Orthologues

Aae-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cgi-Mir-96-P3 Cin-Mir-96-P3 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Csc-Mir-96-P3w Csc-Mir-96-P3x Dan-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dre-Mir-96-P3a-v2 Dsi-Mir-96-P3 Dya-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2 Hme-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3a-v2 Mal-Mir-96-P3b-v1 Mal-Mir-96-P3b-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Spt-Mir-96-P3 Spu-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Skow_1.1)

NW_003114962.1: 34337-34398 [+]

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P3 NW_003114962.1: 34337-34398 [+]
Mir-96-P1 NW_003114962.1: 36626-36685 [+]
Mir-96-P2 NW_003114962.1: 37045-37105 [+]

Precursor
(pre-Mir +30nt flank)

UGUGCUUUCACAUUACCACUUUGCGCUGUGAAUGGCACUGUAUGAAUUCACUGCACUCUGAUCGCUUCCAGUGGAUUUUCCAGUGCCAUUUACAACGUCAAGAAUUAAAUCGCAUAUCAAUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGUGCUUUCACAUUACCA--|  U   C              UAU          CACUCUG 
                    CUU GCG UGUGAAUGGCACUG   GAAUUCACUG       \
                    GAA UGC ACAUUUACCGUGAC   UUUAGGUGAC       A
CUAACUAUACGCUAAAUUAA^  C   A              CU-          CUUCGCU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Sko-Mir-96-P3_5p

mirBase accession

MIMAT0009631

Sequence

0- AAUGGCACUGUAUGAAUUCACUG -23

Get sequence

Star sequence

Sko-Mir-96-P3_3p* (predicted)

mirBase accession

None

Sequence

40- GUGGAUUUUCCAGUGCCAUUUA -62

Get sequence