MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-96-P3o1

Family name MIR-96 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-183
Paralogues Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pma-Mir-96-P2o1  Pma-Mir-96-P3o2 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tur-Mir-96-P3  War-Mir-96-P3  Xtr-Mir-96-P3-v1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3o1)		 Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
CCCGUCAUCACCACGGUGCCCCCCUCCGUCUAUGGCACUGGUAGAAUUCACUGUGUGGUUGUGGGUUCAGUGAAUUGCCAUCGGGCCAUACACGGCGCUGGGCUCGAGAACCUCGCUCCGCU
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Structure
        10          20        30        40         50        60
CCCGUCAUCACCACGGU--|   CCCU    C      A     AG-         UGUGGU 
                   GCCC    CCGU UAUGGC CUGGU   AAUUCACUG      U
                   CGGG    GGCA AUACCG GGCUA   UUAAGUGAC      G
UCGCCUCGCUCCAAGAGCU^   UCGC    C      -     CCG         UUGGGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-96-P3o1_5p
mirBase accessionMIMAT0019491
Sequence 
0- UAUGGCACUGGUAGAAUUCACUG -23
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Star sequence

Pma-Mir-96-P3o1_3p*
mirBase accessionMIMAT0019492
Sequence 
39- GUGAAUUGCCAUCGGGCCAUACA -62
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