Mir-96-P3o1

MirGeneDB ID

Pma-Mir-96-P3o1

Family name

MIR-96 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-183

Paralogues

Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pma-Mir-96-P2o1 Pma-Mir-96-P3o2

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046104.1: 2254548-2254609 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3o1)

Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

CCCGUCAUCACCACGGUGCCCCCCUCCGUCUAUGGCACUGGUAGAAUUCACUGUGUGGUUGUGGGUUCAGUGAAUUGCCAUCGGGCCAUACACGGCGCUGGGCUCGAGAACCUCGCUCCGCU

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Structure

        10          20        30        40         50        60
CCCGUCAUCACCACGGU--|   CCCU    C      A     AG-         UGUGGU 
                   GCCC    CCGU UAUGGC CUGGU   AAUUCACUG      U
                   CGGG    GGCA AUACCG GGCUA   UUAAGUGAC      G
UCGCCUCGCUCCAAGAGCU^   UCGC    C      -     CCG         UUGGGU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-96-P3o1_5p

mirBase accession

MIMAT0019491

Sequence

0- UAUGGCACUGGUAGAAUUCACUG -23

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Star sequence

Pma-Mir-96-P3o1_3p*

mirBase accession

MIMAT0019492

Sequence

39- GUGAAUUGCCAUCGGGCCAUACA -62

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