MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-96-P1o2

Family name MIR-96 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-96-P1o1  Pma-Mir-96-P2o1  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046114.1: 7245787-7245851 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1o2)		 Mir-96-P3o2 NC_046114.1: 7244256-7244315 [+] UCSC Ensembl
Mir-96-P1o2 NC_046114.1: 7245787-7245851 [+] UCSC Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
CCCCACACACGUGCCCCGGGUUCCUCCACGUUUGGCACUUGCACAUAUUUGCUUCUGUGAGUUCGGAUCCCAGCAAAUGUGCGCGGUGCCACGCGGGGAGUCGCCCCCCAGCAGCGAGAGCGGUG
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Structure
        10          20        30        40        50        60  
CCCCACACACGUGCCCC--|   UC    A   U       U  A          UCUGUGAG 
                   GGGU  CUCC CGU UGGCACU GC CAUAUUUGCU        U
                   CCCG  GAGG GCG ACCGUGG CG GUGUAAACGA        U
GUGGCGAGAGCGACGACCC^   CU    G   C       -  C          CCCUAGGC 
   120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-96-P1o2_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUUGCACAUAUUUGCU -23
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Star sequence

Pma-Mir-96-P1o2_3p* (predicted)
mirBase accessionNone
Sequence 
43- CAAAUGUGCGCGGUGCCACGCG -65
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