MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-96-P1

Family name MIR-96 (all species)
Seed UUGGCAC
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-96
Paralogues Mmu-Mir-96-P2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cgi-Mir-96-P1h  Cgi-Mir-96-P1i  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1a  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Efe-Mir-96-P1  Esc-Mir-96-P1h  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1r-v2  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mun-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1h  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(mm10)
chr6: 30169465-30169528 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1)
Mir-96-P2 chr6: 30165922-30165986 [-] UCSC Ensembl
Mir-96-P1 chr6: 30169465-30169528 [-] UCSC Ensembl
Mir-96-P3-v1 chr6: 30169671-30169732 [-] UCSC Ensembl
Mir-96-P3-v2 chr6: 30169672-30169731 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGUUCCAGUACCAUCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUGUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAAAGCGGGCUGCUGCGGCCACGUUCA
Get precursor sequence
Structure
        10          20        30        40        50        60  
GCCUGUUCCAGUACCAU--|     GG  G  U         G     UU     UGUGUCUC 
                   CUGCUU  CC AU UUGGCACUA CACAU  UUGCU        \
                   GGCGAA  GG UA AACCGUGAU GUGUA  AACGA        U
ACUUGCACCGGCGUCGUCG^     AA  G  U         -     CU     GUGUCGCC 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-96-P1_5p

mirBase accessionMIMAT0000541
Sequence
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0000541
TargetScanVert: mmu-miR-96-5p
miRDB: MIMAT0000541
Star sequence

Mmu-Mir-96-P1_3p*

mirBase accessionMIMAT0017021
Sequence
42- CAAUCAUGUGUAGUGCCAAUAU -64
Get sequence
Proposed targets TargetScanVert: mmu-miR-96-3p
miRDB: MIMAT0017021