MirGeneDB ID | Mmu-Mir-96-P1 |
Family name |
MIR-96 (all species) |
Species |
House mouse (Mus musculus) |
MiRBase ID |
mmu-mir-96
|
Paralogues |
Mmu-Mir-96-P2
Mmu-Mir-96-P3-v1
|
Orthologues |
Agr-Mir-96-P1h
Agr-Mir-96-P1i
Ami-Mir-96-P1
Ava-Mir-96-o1
Bfl-Mir-96-P1
Bla-Mir-96-P1
Bta-Mir-96-P1
Cfa-Mir-96-P1
Cin-Mir-96-P1
Cja-Mir-96-P1
Cli-Mir-96-P1
Cmi-Mir-96-P1
Cpi-Mir-96-P1
Cpo-Mir-96-P1
Csc-Mir-96-P1w
Csc-Mir-96-P1x
Cte-Mir-96-P1
Dgr-Mir-96-P1m
Dgr-Mir-96-P1n
Dno-Mir-96-P1
Dre-Mir-96-P1a
Eba-Mir-96-P1
Ebu-Mir-96-P1e
Ebu-Mir-96-P1f
Ebu-Mir-96-P1g
Eca-Mir-96-P1
Efe-Mir-96-P1
Egr-Mir-96-P1
Esc-Mir-96-P1i
Ete-Mir-96-P1
Gga-Mir-96-P1
Gja-Mir-96-P1
Gmo-Mir-96-P1a
Gsa-Mir-96-P1y
Gsa-Mir-96-P1z
Hmi-Mir-96-P1l1
Hmi-Mir-96-P1l2
Hru-Mir-96-P1h
Hru-Mir-96-P1i
Hsa-Mir-96-P1
Isc-Mir-96-P1
Laf-Mir-96-P1
Lan-Mir-96-P1
Lch-Mir-96-P1
Lgi-Mir-96-P1h
Lgi-Mir-96-P1i
Lhy-Mir-96-P1
Llo-Mir-96-P1
Loc-Mir-96-P1
Lpo-Mir-96-P1r-v1
Lpo-Mir-96-P1s
Lpo-Mir-96-P1t
Lpo-Mir-96-P1u
Mal-Mir-96-P1a
Mal-Mir-96-P1b
Mdo-Mir-96-P1
Mgi-Mir-96-P1h
Mgi-Mir-96-P1i
Mml-Mir-96-P1
Mmr-Mir-96-P1
Mom-Mir-96-P1h
Mom-Mir-96-P1i
Mun-Mir-96-P1
Neu-Mir-96-P1
Npo-Mir-96-P1h
Npo-Mir-96-P1i
Oan-Mir-96-P1
Ocu-Mir-96-P1
Ofu-Mir-96-P1p
Ofu-Mir-96-P1q
Ovu-Mir-96-P1i
Pab-Mir-96-P1
Pau-Mir-96-P1
Pbv-Mir-96-P1
Pca-Mir-96-P1
Pcr-Mir-96-P1
Pdu-Mir-96-P1v
Pdu-Mir-96-P1w
Pdu-Mir-96-P1x
Pfl-Mir-96-P1
Pma-Mir-96-P1o1
Pma-Mir-96-P1o2
Pmi-Mir-96-P1
Pve-Mir-96-P1h
Pve-Mir-96-P1i
Rno-Mir-96-P1
Rph-Mir-96-P1h
Rph-Mir-96-P1i
Sha-Mir-96-P1
Sko-Mir-96-P1
Sma-Mir-96-P1
Sme-Mir-96-P1j
Sme-Mir-96-P1k
Snu-Mir-96-P1
Spt-Mir-96-P1
Spu-Mir-96-P1
Sro-Mir-96-P1
Sto-Mir-96-P1
Tgu-Mir-96-P1
Tni-Mir-96-P1a
Tni-Mir-96-P1b
War-Mir-96-P1
Xbo-Mir-96-P1
Xla-Mir-96-P1c
Xla-Mir-96-P1d
Xtr-Mir-96-P1
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (mm10) |
chr6: 30169465-30169528 [-]
UCSC
Ensembl
|
Clustered miRNAs (< 50kb from Mir-96-P1) |
Mir-96-P2
chr6: 30165922-30165986 [-]
UCSC
Ensembl
Mir-96-P1
chr6: 30169465-30169528 [-]
UCSC
Ensembl
Mir-96-P3-v1
chr6: 30169671-30169732 [-]
UCSC
Ensembl
Mir-96-P3-v2
chr6: 30169672-30169731 [-]
UCSC
Ensembl
|
Seed |
UUGGCAC |
Precursor (pre-Mir +30nt flank) |
GCCUGUUCCAGUACCAUCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUGUGAGCAAUCAUGUGUAGUGCCAAUAUGGGAAAAGCGGGCUGCUGCGGCCACGUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCCUGUUCCAGUACCAU--| GG G U G UU UGUGUCUC
CUGCUU CC AU UUGGCACUA CACAU UUGCU \
GGCGAA GG UA AACCGUGAU GUGUA AACGA U
ACUUGCACCGGCGUCGUCG^ AA G U - CU GUGUCGCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Br |
Br |
Ce |
Ce |
Em |
Em |
He |
Ki |
Li |
Lu |
Ov |
Pa |
Sk |
Sp |
Te |
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Mature sequence |
Mmu-Mir-96-P1_5p |
mirBase accession | MIMAT0000541 |
Sequence |
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
|
Proposed targets |
microrna.org: MIMAT0000541
TargetScanVert: mmu-miR-96-5p
miRDB: MIMAT0000541
|
Star sequence |
Mmu-Mir-96-P1_3p* |
mirBase accession | MIMAT0017021 |
Sequence |
42- CAAUCAUGUGUAGUGCCAAUAU -64
Get sequence
|
Proposed targets |
TargetScanVert: mmu-miR-96-3p
miRDB: MIMAT0017021
|