MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-96-P3-v2

Family name MIR-96 (all species)
Seed UGGCACU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-183
Paralogues Mmu-Mir-96-P1  Mmu-Mir-96-P2  Mmu-Mir-96-P3-v1 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cmi-Mir-96-P3-v1  Cmi-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Csc-Mir-96-P3w  Csc-Mir-96-P3x  Dan-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3a-v1  Dre-Mir-96-P3a-v2  Dsi-Mir-96-P3  Dya-Mir-96-P3  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Gja-Mir-96-P3-v1  Gja-Mir-96-P3-v2  Gmo-Mir-96-P3a-v1  Gmo-Mir-96-P3a-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Loc-Mir-96-P3-v1  Loc-Mir-96-P3-v2  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mal-Mir-96-P3b-v1  Mal-Mir-96-P3b-v2  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mun-Mir-96-P3-v1  Mun-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pbv-Mir-96-P3-v1  Pbv-Mir-96-P3-v2  Pfl-Mir-96-P3  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tni-Mir-96-P3a  Tni-Mir-96-P3b  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3c-v2  Xla-Mir-96-P3d-v1  Xla-Mir-96-P3d-v2  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(mm10)
chr6: 30169672-30169731 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3-v2)
Mir-96-P2 chr6: 30165922-30165986 [-] UCSC Ensembl
Mir-96-P1 chr6: 30169465-30169528 [-] UCSC Ensembl
Mir-96-P3-v1 chr6: 30169671-30169732 [-] UCSC Ensembl
Mir-96-P3-v2 chr6: 30169672-30169731 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGCUGGAGAGUGUGACUCCUGUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCAGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGCACCUU
Get precursor sequence
Structure
        10          20        30          40        50         
AGGCUGGAGAGUGUGAC-  -   UC    G      AC--|    GA        UGAACA 
                  UC CUG  CUGU UAUGGC    UGGUA  AUUCACUG      G
                  AG GAC  GACA AUACCG    GCCAU  UAAGUGAC      U
UUCCACGAGCGCCUAGAC  A   GA    A      GGAA^    --        UGACUC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-96-P3-v2_5p

mirBase accessionMIMAT0000212
Sequence
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Proposed targets microrna.org: MIMAT0000212
TargetScanVert: mmu-miR-183-5p
miRDB: MIMAT0000212
Star sequence

Mmu-Mir-96-P3-v2_3p*

mirBase accessionMIMAT0004539
Sequence
38- GUGAAUUACCGAAGGGCCAUAA -60
Get sequence
Proposed targets microrna.org: MIMAT0004539
TargetScanVert: mmu-miR-183-3p
miRDB: MIMAT0004539