MirGeneDB

MirGeneDB ID

Tca-Mir-96-P3

Family name MIR-96 (all species)
Seed AUGGCAC
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-263a
Paralogues Tca-Mir-96-P2 
Orthologues Aae-Mir-96-P3  Ami-Mir-96-P3-v1  Ami-Mir-96-P3-v2  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bta-Mir-96-P3-v1  Bta-Mir-96-P3-v2  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cfa-Mir-96-P3-v2  Cgi-Mir-96-P3  Cin-Mir-96-P3  Cli-Mir-96-P3-v1  Cli-Mir-96-P3-v2  Cpi-Mir-96-P3-v1  Cpi-Mir-96-P3-v2  Cpo-Mir-96-P3-v1  Cpo-Mir-96-P3-v2  Dan-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dno-Mir-96-P3-v2  Dpu-Mir-96-P3  Dre-Mir-96-P3-v1  Dre-Mir-96-P3-v2  Ete-Mir-96-P3-v1  Ete-Mir-96-P3-v2  Gga-Mir-96-P3-v1  Gga-Mir-96-P3-v2  Hme-Mir-96-P3  Hsa-Mir-96-P3-v1  Hsa-Mir-96-P3-v2  Isc-Mir-96-P3  Lan-Mir-96-P3  Lgi-Mir-96-P3  Mdo-Mir-96-P3-v1  Mdo-Mir-96-P3-v2  Mml-Mir-96-P3-v1  Mml-Mir-96-P3-v2  Mmu-Mir-96-P3-v1  Mmu-Mir-96-P3-v2  Oan-Mir-96-P3-v1  Oan-Mir-96-P3-v2  Ocu-Mir-96-P3-v1  Ocu-Mir-96-P3-v2  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Rno-Mir-96-P3-v1  Rno-Mir-96-P3-v2  Sha-Mir-96-P3-v1  Sha-Mir-96-P3-v2  Sko-Mir-96-P3  Spu-Mir-96-P3  Sto-Mir-96-P3-v1  Sto-Mir-96-P3-v2  Tgu-Mir-96-P3  Xtr-Mir-96-P3-v1  Xtr-Mir-96-P3-v2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG5: 13500413-13500472 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGACGUUUUCCUAGUGAGCAUAGGCCUGCGAAUGGCACUGGAAGAAUUCACGGGGUUCUUCGCACUCCCGUGGACUUUGAGUGCCAUCCUCAGAGCCCUUGUCCGCCCUCUGCGGCCCUC
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Structure
        10         20         30        40        50        60
AGACGUUUUCCUAGUGA-   UA   -|  CGA        G    AA        GUUCU 
                  GCA  GGC CUG   AUGGCACU GAAG  UUCACGGG     U
                  UGU  CCG GAC   UACCGUGA UUUC  AGGUGCCC     C
CUCCCGGCGUCUCCCGCC   UC   A^  UCC        G    --        UCACG 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-96-P3_5p

MirBase accessionMIMAT0010093
Sequence
0- AAUGGCACUGGAAGAAUUCACGGG -24
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Star sequence

Tca-Mir-96-P3_3p*

MirBase accessionMIMAT0019180
Sequence
38- CGUGGACUUUGAGUGCCAUCCU -60
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