Mir-96-P3a-v1

MirGeneDB ID

Gmo-Mir-96-P3a

Family name

MIR-96 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-183

Paralogues

Gmo-Mir-96-P1a Gmo-Mir-96-P2a

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Mal-Mir-96-P3a-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3a-v1)

Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl

Variant

Gmo-Mir-96-P3a-v1

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

AUGGGCGUAAACACUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAGCACACUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACGUAUACCACG

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Structure

        10           20        30          40        50        60
AUGGGCGUAAACACUGA---  C         G      AC--|    GA       GUGAAAG 
                    CU CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                    GA GACGAGACA AUACCG    ACCAU  UAAGUGA       A
GCACCAUAUGCACCAAGAAA  -         A      GGAU^    --       CUAUCAC 
120       110        100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-96-P3a-v1_5p

mirBase accession

MIMAT0044261

Sequence

0- UAUGGCACUGGUAGAAUUCACU -22

Get sequence

Star sequence

Gmo-Mir-96-P3a-v1_3p*

mirBase accession

MIMAT0044262

Sequence

40- UGAAUUACCAUAGGGCCAUAAA -62

Get sequence

Variant

Gmo-Mir-96-P3a-v2

Seed

UGGCACU

Precursor
(pre-Mir +30nt flank)

UGGGCGUAAACACUGACUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAGCACACUAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACGUAUACCAC

Get precursor sequence

Structure

        10          20        30          40        50         
UGGGCGUAAACACUGAC-  -         G      AC--|    GA        UGAAAG 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
CACCAUAUGCACCAAGAA  A         A      GGAU^    --        UAUCAC 
.       110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-96-P3a-v2_5p

mirBase accession

MIMAT0044261

Sequence

0- AUGGCACUGGUAGAAUUCACUG -22

Get sequence

Star sequence

Gmo-Mir-96-P3a-v2_3p* (predicted)

mirBase accession

MIMAT0044262

Sequence

38- GUGAAUUACCAUAGGGCCAUAA -60

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