Mir-96-P2a

MirGeneDB ID

Gmo-Mir-96-P2a

Family name

MIR-96 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-182

Paralogues

Gmo-Mir-96-P1a Gmo-Mir-96-P3a-v1

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dre-Mir-96-P2a Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mal-Mir-96-P2a Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tni-Mir-96-P2a Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2a)

Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl

Seed

UUGGCAA

Precursor
(pre-Mir +30nt flank)

GGUCGUCUCAGAAGCUGCUCUCUGGCGGUAUUUGGCAAUGGUAGAACUCACACUGGUGAGCUAGAAGGAUCCGGUGGUUCUAGACUUGCCAACUACCGCUCUGGGUCUAAGCUCCGACACAGAGG

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Structure

        10         20         30        40        50        60  
GGUCGUCUCAGAAGCUGCU-   U-|      U       UGG      U   ACUGGUGAGC 
                    CUC  GGCGGUA UUGGCAA   UAGAAC CAC          U
                    GGG  UCGCCAU AACCGUU   AUCUUG GUG          A
GGAGACACAGCCUCGAAUCU   UC^      C       CAG      -   GCCUAGGAAG 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-96-P2a_5p

mirBase accession

MIMAT0044265

Sequence

0- UUUGGCAAUGGUAGAACUCACACU -24

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Star sequence

Gmo-Mir-96-P2a_3p*

mirBase accession

MIMAT0044266

Sequence

44- UGGUUCUAGACUUGCCAACUA -65

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