MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-96-P2a

Family name MIR-96 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-182
Paralogues Dre-Mir-96-P1a  Dre-Mir-96-P3a-v1 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gmo-Mir-96-P2a  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Loc-Mir-96-P2  Mal-Mir-96-P2a  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tni-Mir-96-P2a  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr4: 15075668-15075732 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2a)		 Mir-96-P3a-v1 chr4: 15074581-15074642 [+] UCSC Ensembl
Mir-96-P3a-v2 chr4: 15074582-15074641 [+] UCSC Ensembl
Mir-96-P1a chr4: 15074738-15074801 [+] UCSC Ensembl
Mir-96-P2a chr4: 15075668-15075732 [+] UCSC Ensembl
Seed UUGGCAA
Precursor
(pre-Mir +30nt flank)		 
AUUUCAAGGACAAAAGGUUCUCUGAUGGUAUUUGGCAAUGGUAGAACUCACACUGGUGAGGUAGUCAGAUCCGGUGGUUCUAGACUUGCCAACUACUACCUGAGAACAACUCCACUGUAAGGCAU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUUUCAAGGACAAAAGG--|    UGA     U       UGG      U   ACUGGUGAGG 
                   UUCUC   UGGUA UUGGCAA   UAGAAC CAC          U
                   AAGAG   AUCAU AACCGUU   AUCUUG GUG          A
UACGGAAUGUCACCUCAAC^    UCC     C       CAG      -   GCCUAGACUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-96-P2a_5p
mirBase accessionMIMAT0001271
Sequence 
0- UUUGGCAAUGGUAGAACUCACACU -24
Get sequence
Proposed targets TargetScanFish: dre-miR-182
Star sequence

Dre-Mir-96-P2a_3p*
mirBase accessionMIMAT0001272
Sequence 
44- UGGUUCUAGACUUGCCAACUA -65
Get sequence