Mir-96-P1a

MirGeneDB ID

Dre-Mir-96-P1a

Family name

MIR-96 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-96

Paralogues

Dre-Mir-96-P2a Dre-Mir-96-P3a-v1

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mal-Mir-96-P1a Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr4: 15074738-15074801 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1a)

Mir-96-P3a-v1 chr4: 15074581-15074642 [+] UCSC Ensembl
Mir-96-P3a-v2 chr4: 15074582-15074641 [+] UCSC Ensembl
Mir-96-P1a chr4: 15074738-15074801 [+] UCSC Ensembl
Mir-96-P2a chr4: 15075668-15075732 [+] UCSC Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

UGGUCGAGCUGGGCGCUCUUCUUUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACAAGACAGACAUGCUACUUAAAAAAA

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Structure

        10          20        30        40        50        60  
UGGUCGAGCUGGGCGCU-  -|   UG     U         G     UU     UUUUUAUA 
                  CU UCUU  CCUGU UUGGCACUA CACAU  UUGCU        \
                  GA AGAA  GGGUA AACCGUGAU GUGUA  AACGA        U
AAAAAAAUUCAUCGUACA  C^   CA     U         -     UU     GUUCCAUA 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-96-P1a_5p

mirBase accession

MIMAT0001811

Sequence

0- UUUGGCACUAGCACAUUUUUGCU -23

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Proposed targets

TargetScanFish: dre-miR-96

Star sequence

Dre-Mir-96-P1a_3p*

mirBase accession

MIMAT0031956

Sequence

42- CAAUUAUGUGUAGUGCCAAUAU -64

Get sequence