MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-96-P1

Family name MIR-96 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-96
Paralogues Rno-Mir-96-P2  Rno-Mir-96-P3-v1 
Orthologues Agr-Mir-96-P1h  Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dgr-Mir-96-P1m  Dgr-Mir-96-P1n  Dno-Mir-96-P1  Dre-Mir-96-P1a  Eba-Mir-96-P1  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Gsa-Mir-96-P1y  Gsa-Mir-96-P1z  Hmi-Mir-96-P1l1  Hmi-Mir-96-P1l2  Hru-Mir-96-P1h  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mgi-Mir-96-P1h  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1h  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ofu-Mir-96-P1p  Ofu-Mir-96-P1q  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pdu-Mir-96-P1v  Pdu-Mir-96-P1w  Pdu-Mir-96-P1x  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Pve-Mir-96-P1h  Pve-Mir-96-P1i  Rph-Mir-96-P1h  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  War-Mir-96-P1  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr4: 57463385-57463448 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1)		 Mir-96-P2 chr4: 57459736-57459800 [-] UCSC Ensembl
Mir-96-P1 chr4: 57463385-57463448 [-] UCSC Ensembl
Mir-96-P3-v1 chr4: 57463591-57463652 [-] UCSC Ensembl
Mir-96-P3-v2 chr4: 57463592-57463651 [-] UCSC Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
GCCUGUUCCAGUACCAUCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUGUCUCUCCGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAAAAGCGGGCUGCUGCGGCCACGUUCA
Get precursor sequence
Structure
        10          20        30        40        50        60  
GCCUGUUCCAGUACCAU--|     GG  G  U        A      UU     UGUGUCUC 
                   CUGCUU  CC AU UUGGCACU GCACAU  UUGCU        \
                   GGCGAA  GG UA AACCGUGA CGUGUA  AACGA        U
ACUUGCACCGGCGUCGUCG^     AA  G  U        -      CU     GUCUCGCC 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Mature sequence

Rno-Mir-96-P1_5p
mirBase accessionMIMAT0000818
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
Proposed targets microrna.org: MIMAT0000818
TargetScanVert: rno-miR-96-5p
miRDB: MIMAT0000818
Star sequence

Rno-Mir-96-P1_3p*
mirBase accessionMIMAT0017110
Sequence 
42- CAAUCAUGUGCAGUGCCAAUAU -64
Get sequence
Proposed targets TargetScanVert: rno-miR-96-3p
miRDB: MIMAT0017110