MirGeneDB 3.0
MirGeneDB ID

Csc-Mir-96-P1w

Family name MIR-96 (all species)
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-96-P1x  Csc-Mir-96-P2w  Csc-Mir-96-P3w  Csc-Mir-96-P3x 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pdu-Mir-96-P1w  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019385290.1: 225058-225118 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1w)		 Mir-96-P3w NW_019385290.1: 223516-223575 [+] Ensembl
Mir-96-P2w NW_019385290.1: 224908-224968 [+] Ensembl
Mir-96-P1w NW_019385290.1: 225058-225118 [+] Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AAGCUCGUACUGUACCGUACUCCUCCGUUCUUUGGCACUAGCACAUUUUUGUGUUCCUGUCGUACGACAAAAAUUGUAGUAGUGUCAAGUAACACGGGGAGGCCGACGUCCGAUCCUUCGG
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Structure
        10         20        30          40         50         
AAGCUCGUACUGUACCGUA-    U    UC--          GC  -|       GUUCCU 
                    CUCC CCGU    UUUGGCACUA  AC AUUUUUGU      G
                    GAGG GGCA    GAACUGUGAU  UG UAAAAACA      U
GGCUUCCUAGCCUGCAGCCG    -    CAAU          GA  U^       GCAUGC 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-96-P1w_5p (predicted)
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGU -22
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Star sequence

Csc-Mir-96-P1w_3p* (predicted)
mirBase accessionNone
Sequence 
39- AAAAUUGUAGUAGUGUCAAGUA -61
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