MirGeneDB 2.1
MirGeneDB ID

Csc-Mir-96-P1w

Family name MIR-96 (all species)
Seed UUGGCAC
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-96-P1x  Csc-Mir-96-P2w  Csc-Mir-96-P3w  Csc-Mir-96-P3x 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Efe-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Bilateria
Genome context
(GCF_000671375.1_CSC)		 NW_019385290.1: 225058-225118 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUCGUACUGUACCGUACUCCUCCGUUCUUUGGCACUAGCACAUUUUUGUGUUCCUGUCGUACGACAAAAAUUGUAGUAGUGUCAAGUAACACGGGGAGGCCGACGUCCGAUCCUUCGG
Get precursor sequence
Structure
        10         20        30          40         50         
AAGCUCGUACUGUACCGUA-    U    UC--          GC  -|       GUUCCU 
                    CUCC CCGU    UUUGGCACUA  AC AUUUUUGU      G
                    GAGG GGCA    GAACUGUGAU  UG UAAAAACA      U
GGCUUCCUAGCCUGCAGCCG    -    CAAU          GA  U^       GCAUGC 
 .       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma
Mature sequence

Csc-Mir-96-P1w_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGU -22
Get sequence
Star sequence

Csc-Mir-96-P1w_3p*
mirBase accessionNone
Sequence 
39- AAAAUUGUAGUAGUGUCAAGUA -61
Get sequence