MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-96-P1

Family name MIR-96 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-96-P2  Lch-Mir-96-P3 
Orthologues Agr-Mir-96-P1h  Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Csc-Mir-96-P1w  Csc-Mir-96-P1x  Cte-Mir-96-P1  Dgr-Mir-96-P1m  Dgr-Mir-96-P1n  Dno-Mir-96-P1  Dre-Mir-96-P1a  Eba-Mir-96-P1  Ebu-Mir-96-P1e  Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Esc-Mir-96-P1i  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Gsa-Mir-96-P1y  Gsa-Mir-96-P1z  Hmi-Mir-96-P1l1  Hmi-Mir-96-P1l2  Hru-Mir-96-P1h  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lgi-Mir-96-P1h  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Mal-Mir-96-P1a  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mgi-Mir-96-P1h  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1h  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1h  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ofu-Mir-96-P1p  Ofu-Mir-96-P1q  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pdu-Mir-96-P1v  Pdu-Mir-96-P1w  Pdu-Mir-96-P1x  Pfl-Mir-96-P1  Pma-Mir-96-P1o1  Pma-Mir-96-P1o2  Pmi-Mir-96-P1  Pve-Mir-96-P1h  Pve-Mir-96-P1i  Rno-Mir-96-P1  Rph-Mir-96-P1h  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Sme-Mir-96-P1j  Sme-Mir-96-P1k  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  Tni-Mir-96-P1b  War-Mir-96-P1  Xbo-Mir-96-P1  Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xtr-Mir-96-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 JH127218.1: 511439-511502 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1)		 Mir-96-P2 JH127218.1: 494388-494452 [-] Ensembl
Mir-96-P1 JH127218.1: 511439-511502 [-] Ensembl
Mir-96-P3 JH127218.1: 516970-517031 [-] Ensembl
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AGAAAGAGAGAAACCCACUUCUUUGCCCGUUUUGGCACUAGCACAUUUUUGCUUCUGUCUAUACAUAUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGAAAAGUUGGAAGAACGACACUUUGCUU
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Structure
        10         20         30        40        50        60  
AGAAAGAGAGAAACCCA-  U-|   G     U         G     UU     UCUGUCUA 
                  CU  CUUU CCCGU UUGGCACUA CACAU  UUGCU        \
                  GG  GAAA GGGUA AACCGUGAU GUGUA  AACGA        U
UUCGUUUCACAGCAAGAA  UU^   A     U         -     UU     GUUAUACA 
  120       110       100        90         80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-96-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Lch-Mir-96-P1_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAAUUAUGUGUAGUGCCAAUAU -64
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