MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-96-P1d

Family name MIR-96 (all species)
Seed UUGGCAC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-96
Paralogues Xla-Mir-96-P1c  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3c-v2  Xla-Mir-96-P3d-v1  Xla-Mir-96-P3d-v2 
Orthologues Ami-Mir-96-P1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Efe-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pbv-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)
NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1d)
Mir-96-P2d NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Mir-96-P1d NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Mir-96-P3d-v1 NC_030729.1: 63429415-63429476 [-] UCSC Ensembl
Mir-96-P3d-v2 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNAGAGAACUCUGUCUGGCCUGCUUUGGCACUAGCACAUUUUUGCUUUUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGACAAUACAGAAUAUUCUGCAACUAGCC
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Structure
        10         20         30        40        50        60  
NNNNNNNNNAGAGAACU-    C-| G    CU         G     UU     UUUGUAUA 
                  CUGU  UG CCUG  UUGGCACUA CACAU  UUGCU        \
                  GACA  AC GGAU  AACCGUGAU GUGUA  AACGA        U
CCGAUCAACGUCUUAUAA    UA^ A    AU         -     UU     GUUUCAUA 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-96-P1d_5p

mirBase accessionMIMAT0046615
Sequence
0- UUUGGCACUAGCACAUUUUUGCU -23
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Star sequence

Xla-Mir-96-P1d_3p*

mirBase accessionMIMAT0046616
Sequence
42- CAAUUAUGUGUAGUGCCAAUAU -64
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