Mir-96-P2d

MirGeneDB ID

Xla-Mir-96-P2d

Family name

MIR-96 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-182-1

Paralogues

Xla-Mir-96-P1c Xla-Mir-96-P1d Xla-Mir-96-P2c Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 63424667-63424731 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2d)

Mir-96-P2d NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Mir-96-P1d NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Mir-96-P3d-v1 NC_030729.1: 63429415-63429476 [-] UCSC Ensembl
Mir-96-P3d-v2 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl

Seed

UUGGCAA

Precursor
(pre-Mir +30nt flank)

UCAUCAGGAACAAUGACUUCUCUGGCAGUGUUUGGCAAUGGUAGAACUCACACUGGUGAGCUAUGUAGAUCCGGUGGUUCUAGACUUGCCAACUAUGGCCUGAGAAUAAAGCAACAUUUGCAUCG

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Structure

        10          20        30        40        50        60  
UCAUCAGGAACAAUGAC--|    U   A   U       UGG      U   ACUGGUGAGC 
                   UUCUC GGC GUG UUGGCAA   UAGAAC CAC          U
                   AAGAG CCG UAU AACCGUU   AUCUUG GUG          A
GCUACGUUUACAACGAAAU^    U   G   C       CAG      -   GCCUAGAUGU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-96-P2d_5p

mirBase accession

MIMAT0046490

Sequence

0- UUUGGCAAUGGUAGAACUCACACU -24

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Star sequence

Xla-Mir-96-P2d_3p*

mirBase accession

MIMAT0046491

Sequence

44- UGGUUCUAGACUUGCCAACUA -65

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