MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-96-P3d

Family name MIR-96 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-183
Paralogues Xla-Mir-96-P1c  Xla-Mir-96-P1d  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xla-Mir-96-P3c-v1  Xla-Mir-96-P3d-v1 
Orthologues Aae-Mir-96-P3  Aga-Mir-96-P3  Agr-Mir-96-P3  Ami-Mir-96-P3-v1  Asu-Mir-96-P3  Bfl-Mir-96-P3  Bge-Mir-96-P3  Bko-Mir-96-P3  Bla-Mir-96-P3  Bpl-Mir-96-P3  Bta-Mir-96-P3-v1  Cbr-Mir-96-P3  Cel-Mir-96-P3  Cfa-Mir-96-P3-v1  Cin-Mir-96-P3  Cja-Mir-96-P3-v1  Cli-Mir-96-P3-v1  Cmi-Mir-96-P3-v1  Cpi-Mir-96-P3-v1  Cpo-Mir-96-P3-v1  Cte-Mir-96-P3  Dan-Mir-96-P3  Dgr-Mir-96-P3  Dlo-Mir-96-P3  Dma-Mir-96-P3  Dme-Mir-96-P3  Dmo-Mir-96-P3  Dno-Mir-96-P3-v1  Dpu-Mir-96-P3  Dsi-Mir-96-P3  Dya-Mir-96-P3  Eba-Mir-96-P3  Eca-Mir-96-P3-v1  Egr-Mir-96-P3  Ete-Mir-96-P3-v1  Gga-Mir-96-P3-v1  Gja-Mir-96-P3-v1  Gpa-Mir-96-P3  Gsp-Mir-96-P3  Hme-Mir-96-P3  Hru-Mir-96-P3  Hsa-Mir-96-P3-v1  Isc-Mir-96-P3  Lan-Mir-96-P3  Lch-Mir-96-P3  Lgi-Mir-96-P3  Lhy-Mir-96-P3  Llo-Mir-96-P3  Loc-Mir-96-P3-v1  Mdo-Mir-96-P3-v1  Mgi-Mir-96-P3  Mml-Mir-96-P3-v1  Mmr-Mir-96-P3-v1  Mmu-Mir-96-P3-v1  Mom-Mir-96-P3  Mun-Mir-96-P3-v1  Neu-Mir-96-P3-v1  Oan-Mir-96-P3-v1  Ocu-Mir-96-P3-v1  Ofu-Mir-96-P3  Pab-Mir-96-P3-v1  Pbv-Mir-96-P3-v1  Pca-Mir-96-P3  Pcr-Mir-96-P3  Pdu-Mir-96-P3  Pfl-Mir-96-P3  Pmi-Mir-96-P3  Pve-Mir-96-P3  Rno-Mir-96-P3-v1  Rph-Mir-96-P3  Sha-Mir-96-P3-v1  Sko-Mir-96-P3  Snu-Mir-96-P3  Spt-Mir-96-P3  Spu-Mir-96-P3  Sro-Mir-96-P3  Sto-Mir-96-P3-v1  Tca-Mir-96-P3  Tgu-Mir-96-P3  Tur-Mir-96-P3  War-Mir-96-P3  Xtr-Mir-96-P3-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P3d-v2)		 Mir-96-P2d NC_030729.1: 63424667-63424731 [-] UCSC Ensembl
Mir-96-P1d NC_030729.1: 63428529-63428592 [-] UCSC Ensembl
Mir-96-P3d-v1 NC_030729.1: 63429415-63429476 [-] UCSC Ensembl
Mir-96-P3d-v2 NC_030729.1: 63429416-63429475 [-] UCSC Ensembl
Variant

Xla-Mir-96-P3d-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
CGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGACCACG
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Structure
        10          20        30          40        50         
CGCUGGGUGAGCAUCCC-  -         G      AC--|    GA        UGAAAA 
                  UC CUGUUCUGU UAUGGC    UGGUA  AUUCACUG      C
                  AG GACGAGACA AUACCG    ACCAU  UAAGUGAC      A
GCACCAGAACACCAAGAA  A         A      GGAU^    --        UAAAAC 
.       110       100        90        80          70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-96-P3d-v2_5p
mirBase accessionMIMAT0046493
Sequence 
0- AUGGCACUGGUAGAAUUCACUG -22
Get sequence
Star sequence

Xla-Mir-96-P3d-v2_3p*
mirBase accessionMIMAT0046494
Sequence 
38- GUGAAUUACCAUAGGGCCAUAA -60
Get sequence
Variant

Xla-Mir-96-P3d-v1
Seed AUGGCAC
Precursor
(pre-Mir +30nt flank)		 
ACGCUGGGUGAGCAUCCCUCCUGUUCUGUGUAUGGCACUGGUAGAAUUCACUGUGAAAACACAAAAUCAGUGAAUUACCAUAGGGCCAUAAACAGAGCAGAGAAAGAACCACAAGACCACGU
Get precursor sequence
Structure
        10         20         30          40        50        60
ACGCUGGGUGAGCAUCCC-  -         G      AC--|    GA       GUGAAAA 
                   UC CUGUUCUGU UAUGGC    UGGUA  AUUCACU       C
                   AG GACGAGACA AUACCG    ACCAU  UAAGUGA       A
UGCACCAGAACACCAAGAA  A         A      GGAU^    --       CUAAAAC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-96-P3d-v1_5p
mirBase accessionMIMAT0046493
Sequence 
0- UAUGGCACUGGUAGAAUUCACU -22
Get sequence
Star sequence

Xla-Mir-96-P3d-v1_3p*
mirBase accessionMIMAT0046494
Sequence 
40- UGAAUUACCAUAGGGCCAUAAA -62
Get sequence