Mir-96-P3

MirGeneDB ID

Spu-Mir-96-P3

Family name

MIR-96 (all species)

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-183

Paralogues

Spu-Mir-96-P1 Spu-Mir-96-P2

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gmo-Mir-96-P3a-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3b-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000857.1: 2625088-2625155 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P3 AAGJ06000857.1: 2625088-2625155 [+] Ensembl
Mir-96-P1 AAGJ06000857.1: 2626661-2626734 [+] Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

GCUUGACUUCAUUUAUCUCUGCUCCUCGUCUAUGGCACUAUAGAAUUCACUGUGUGUUGUGUUGCCAUGGUAACAGCUGGUUCUACAGUGCCAUUGCAUGAUGGGUAGAAACAUUCAUGUUUGUCAUU

Get precursor sequence

Structure

        10          20        30         40        50        60   
GCUUGACUUCAUUUAUC--       C    CU-|       A       CA   UGUGUUGUGU 
                   UCUGCUC UCGU   AUGGCACU UAGAAUU  CUG          \
                   AGAUGGG AGUA   UACCGUGA AUCUUGG  GAC          U
UUACUGUUUGUACUUACAA       U    CGU^       C       UC   AAUGGUACCG 
      120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

32	Bl	Eg	Ga	Ov	Pl	To	To

Mature sequence

Spu-Mir-96-P3_5p

mirBase accession

MIMAT0009684

Sequence

0- UAUGGCACUAUAGAAUUCACUG -22

Get sequence

Star sequence

Spu-Mir-96-P3_3p*

mirBase accession

None

Sequence

45- GCUGGUUCUACAGUGCCAUUGCA -68

Get sequence