Mir-96-P3

MirGeneDB ID

Bla-Mir-96-P3

Family name

MIR-96 (all species)

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-96-P1 Bla-Mir-96-P2f Bla-Mir-96-P2g Bla-Mir-96-P2h Bla-Mir-96-P2i Bla-Mir-96-P2j Bla-Mir-96-P2k

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cli-Mir-96-P3-v1 Cmi-Mir-96-P3-v1 Cpi-Mir-96-P3-v1 Cpo-Mir-96-P3-v1 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Gga-Mir-96-P3-v1 Gja-Mir-96-P3-v1 Gmo-Mir-96-P3a-v1 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3b-v1 Mdo-Mir-96-P3-v1 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mmr-Mir-96-P3-v1 Mmu-Mir-96-P3-v1 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Neu-Mir-96-P3-v1 Oan-Mir-96-P3-v1 Ocu-Mir-96-P3-v1 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3d-v1 Xtr-Mir-96-P3-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000043: 398484-398542 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P1 Sc0000043: 397228-397287 [-] Ensembl
Mir-96-P3 Sc0000043: 398484-398542 [-] Ensembl

Seed

AUGGCAC

Precursor
(pre-Mir +30nt flank)

CCUGGCGUUUCCACGUGCCCGUUCACGGUCUAUGGCACUGGUAGAAUUCACUGAUCGUAGACACCAGUGAUUCUUCAGUCAGCCAUAAACUGUGGCGGGAAACCGGUCAUCGGAGGCGG

Get precursor sequence

Structure

        10           20        30          40        50         
CCUGGCGUUUCCACGUG---    U       C      --|    U     U     AUCGU 
                    CCCG UCACGGU UAUGGC  ACUGG AGAAU CACUG     \
                    GGGC GGUGUCA AUACCG  UGACU UCUUA GUGAC     A
GGCGGAGGCUACUGGCCAAA    -       A      AC^    -     -     CACAG 
       110       100         90        80         70         60

Deep sequencing

Go to detailed chart

Comment

The 3' end of the 5p arm appears to be monoadenylated.

3' NTU

Motifs

Tissue expression

Ad	Ad	Em	Em	Em	Em

Mature sequence

Bla-Mir-96-P3_5p

mirBase accession

None

Sequence

0- UAUGGCACUGGUAGAAUUCACUGA -24

Get sequence

Star sequence

Bla-Mir-96-P3_3p*

mirBase accession

None

Sequence

36- GUGAUUCUUCAGUCAGCCAUAAA -59

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