MirGeneDB 2.1
MirGeneDB ID

Bla-Mir-96-P2k

Family name MIR-96 (all species)
Seed AGAAUUC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-96-P1  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2i  Bla-Mir-96-P2j  Bla-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bfl-Mir-96-P2k  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000146: 18567-18638 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAGUCACUCCUUCAUUGGAACUAGGUUUCUUGGCACUUGAGGAAUUCUUUGUCCCCUAGGUUCAGUUUUGAUCAAUCAAAGAAUUCCCCAGUACUGAGGGACCUGGCUUCAAACAGCAACUAAUACACCA
Get precursor sequence
Structure
        10          20        30        40        50        60      
AAAAGUCACUCCUUCAU--|   A      UU  UG C   U A           UCCCCUAGGUUC 
                   UGGA CUAGGU  CU  G ACU G GGAAUUCUUUG            \
                   ACUU GGUCCA  GA  C UGA C CCUUAAGAAAC            A
ACCACAUAAUCAACGACAA^   C      GG  GU A   - C           UAACUAGUUUUG 
130       120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-96-P2k_5p* (predicted)
mirBase accessionNone
Sequence 
0- CUUGGCACUUGAGGAAUUCUUUG -23
Get sequence
Mature sequence

Bla-Mir-96-P2k_3p
mirBase accessionNone
Sequence 
50- AAGAAUUCCCCAGUACUGAGGG -72
Get sequence