Mir-96-P2j

MirGeneDB ID

Bla-Mir-96-P2j

Family name

MIR-96 (all species)

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-96-P1 Bla-Mir-96-P2f Bla-Mir-96-P2g Bla-Mir-96-P2h Bla-Mir-96-P2i Bla-Mir-96-P2k Bla-Mir-96-P3

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bfl-Mir-96-P2j Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000146: 18961-19028 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2j)

Mir-96-P2k Sc0000146: 18567-18638 [-] Ensembl
Mir-96-P2j Sc0000146: 18961-19028 [-] Ensembl
Mir-96-P2i Sc0000146: 19422-19501 [-] Ensembl
Mir-96-P2h Sc0000146: 19736-19813 [-] Ensembl

Seed

AGAAUUC

Precursor
(pre-Mir +30nt flank)

AUAUUGUCAAUGACACUGUGGGCUAGACUUCUUGGCACUAGUGGAGUUCUCUGUGUGUGUUGUAACAGAAGGAUCACAGAAUUCCCCAGUACCAAGGGGUCUGACCUGAAAUAGCUUACCAUCCACCU

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Structure

        10          20        30        40        50        60     
AUAUUGUCAAUGACACUGU--|  C            C   AGU     UC      UGUGUUGUA 
                     GGG UAGACUUCUUGG ACU   GGAGU  UCUGUG         \
                     UCC GUCUGGGGAACC UGA   CCUUA  AGACAC         A
UCCACCUACCAUUCGAUAAAG^  A            A   CC-     --      UAGGAAGAC 
      120       110       100        90           80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-96-P2j_5p*

mirBase accession

None

Sequence

0- CUUGGCACUAGUGGAGUUCUCUGUG -25

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Mature sequence

Bla-Mir-96-P2j_3p

mirBase accession

None

Sequence

46- CAGAAUUCCCCAGUACCAAGGG -68

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