MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-96-P2i

Family name MIR-96 (all species)
Seed AGAAUUC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-96-P1  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2j  Bla-Mir-96-P2k  Bla-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bfl-Mir-96-P2i  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)
Sc0000146: 19422-19501 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUUCUCACUGAUUAUGGGGACUAGUUUUCUUGGCACUUGAGGAAUUCUCUGUUUUGUUGCAUGUAAUGUGCAUCUUCAUGGUAUCACAGAAUUCCCCAGUACCAAGGAAACUGGGUCUUACUUUCUAACCCAACCCAA
Get precursor sequence
Structure
        10          20        30        40        50        60          
GUCUUCUCACUGAUUAU--|  GA             C   U A        C  UUUUGUUGCAUGUAAU 
                   GGG  CUAGUUUUCUUGG ACU G GGAAUUCU UG                \
                   UUC  GGUCAAAGGAACC UGA C CCUUAAGA AC                G
AACCCAACCCAAUCUUUCA^  UG             A   - C        C  UAUGGUACUUCUACGU 
.       130       120       110       100         90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-96-P2i_5p*

mirBase accessionNone
Sequence
0- CUUGGCACUUGAGGAAUUCUCUG -23
Get sequence
Mature sequence

Bla-Mir-96-P2i_3p

mirBase accessionNone
Sequence
58- CAGAAUUCCCCAGUACCAAGGA -80
Get sequence