MirGeneDB

MirGeneDB ID

Aca-Mir-96-P2

Family name MIR-96 (all species)
Seed UUGGCAA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-182
Paralogues
Orthologues Aae-Mir-96-P2  Ami-Mir-96-P2  Bfl-Mir-96-P2a  Bfl-Mir-96-P2b  Bfl-Mir-96-P2c  Bge-Mir-96-P2  Bta-Mir-96-P2  Cbr-Mir-96-P2f  Cbr-Mir-96-P2g  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cgi-Mir-96-P2h  Cgi-Mir-96-P2i  Cin-Mir-96-P2  Cli-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dre-Mir-96-P2  Efe-Mir-96-P2d  Efe-Mir-96-P2e  Ete-Mir-96-P2  Gga-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lgi-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Oan-Mir-96-P2  Ocu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(anoCar2)
G889P619112RE16: 188-252 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGGCACCCUUUUGUUUUCUCCGGCUGUUUUUGGCAAUGGUAGAACUCACACUGGUGAGGUAUCAGGAUCCGGUGGUUCUAGACUUGCCAACUACGGCCCGAGGGUCAAGGCGGACCUACGACG
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Structure
        10          20        30        40        50        60  
AUUGGCACCCUUUUGUU--|    C      UU       UGG      U   ACUGGUGAGG 
                   UUCUC GGCUGU  UUGGCAA   UAGAAC CAC          U
                   GGGAG CCGGCA  AACCGUU   AUCUUG GUG          A
GCAGCAUCCAGGCGGAACU^    C      UC       CAG      -   GCCUAGGACU 
   120       110       100        90        80         70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU No
MotifsNo
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-96-P2_5p

MirBase accessionMIMAT0021811
Sequence
0- UUUGGCAAUGGUAGAACUCACACU -24
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Star sequence

Aca-Mir-96-P2_3p*

MirBase accessionMIMAT0021812
Sequence
44- UGGUUCUAGACUUGCCAACUA -65
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