MirGeneDB ID | Efe-Mir-96-P2n |
Family name |
MIR-96 (all species) |
Seed |
UUGGCAC |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-96-P1
Efe-Mir-96-P2o
|
Orthologues |
Aae-Mir-96-P2
Aca-Mir-96-P2
Ami-Mir-96-P2
Asu-Mir-96-P2
Bge-Mir-96-P2
Bta-Mir-96-P2
Cel-Mir-96-P2
Cfa-Mir-96-P2
Cin-Mir-96-P2
Cli-Mir-96-P2
Cmi-Mir-96-P2
Cpi-Mir-96-P2
Cpo-Mir-96-P2
Cte-Mir-96-P2
Dan-Mir-96-P2
Dma-Mir-96-P2
Dme-Mir-96-P2
Dno-Mir-96-P2
Dpu-Mir-96-P2
Dsi-Mir-96-P2
Dya-Mir-96-P2
Ete-Mir-96-P2
Gga-Mir-96-P2
Gja-Mir-96-P2
Hme-Mir-96-P2
Hsa-Mir-96-P2
Isc-Mir-96-P2
Lan-Mir-96-P2
Lch-Mir-96-P2
Lgi-Mir-96-P2
Loc-Mir-96-P2
Mdo-Mir-96-P2
Mml-Mir-96-P2
Mmu-Mir-96-P2
Mun-Mir-96-P2
Npo-Mir-96-P2
Oan-Mir-96-P2
Obi-Mir-96-P2
Ocu-Mir-96-P2
Ovu-Mir-96-P2
Pbv-Mir-96-P2
Pfl-Mir-96-P2
Pmi-Mir-96-P2
Rno-Mir-96-P2
Sha-Mir-96-P2
Sko-Mir-96-P2
Spt-Mir-96-P2
Spu-Mir-96-P2
Sto-Mir-96-P2
Tca-Mir-96-P2
Tgu-Mir-96-P2
Xtr-Mir-96-P2
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.342161: 1259-1320 [+]
|
Precursor (pre-Mir +30nt flank) |
AUCUGAAUACAAGUCGAGGCACGAACUGUUUUUGGCACUUGUAGAAUUCACUGAAUAAGUGAUGAACAUCAGGGAUUCUGCAAUGCCUUAGACGGUCGGCCCGAGUCAACCUGCGGCAACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCUGAAUACAAGUCGA----| A A UU C A AUAAGU
GGC CGA CUGUUU GGCA UUGUAGAAUUC CUGA G
CCG GCU GGCAGA CCGU AACGUCUUAGG GACU A
GACAACGGCGUCCAACUGAGC^ - - UU - - ACAAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Efe-Mir-96-P2n_5p |
mirBase accession | None |
Sequence |
0- UUUGGCACUUGUAGAAUUCACUGA -24
Get sequence
|
Star sequence |
Efe-Mir-96-P2n_3p* |
mirBase accession | None |
Sequence |
40- AGGGAUUCUGCAAUGCCUUAGA -62
Get sequence
|