MirGeneDB 2.1

MirGeneDB ID

Sko-Mir-96-P2

Family name MIR-96 (all species)
Seed UUGGCAA
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-182
Paralogues Sko-Mir-96-P1  Sko-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bfl-Mir-96-P2f  Bfl-Mir-96-P2g  Bfl-Mir-96-P2h  Bfl-Mir-96-P2i  Bfl-Mir-96-P2j  Bfl-Mir-96-P2k  Bge-Mir-96-P2  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2i  Bla-Mir-96-P2j  Bla-Mir-96-P2k  Bta-Mir-96-P2  Cbr-Mir-96-P2p  Cbr-Mir-96-P2q  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cgi-Mir-96-P2l  Cgi-Mir-96-P2m  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Csc-Mir-96-P2w  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dre-Mir-96-P2a  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ebu-Mir-96-P2e  Efe-Mir-96-P2n  Efe-Mir-96-P2o  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gmo-Mir-96-P2a  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Lpo-Mir-96-P2r  Lpo-Mir-96-P2s-v1  Lpo-Mir-96-P2s-v2  Lpo-Mir-96-P2t-v1  Lpo-Mir-96-P2t-v2  Lpo-Mir-96-P2u  Lpo-Mir-96-P2v-v1  Lpo-Mir-96-P2v-v2  Mal-Mir-96-P2a  Mal-Mir-96-P2b  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pma-Mir-96-P2o1  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tni-Mir-96-P2a  Tni-Mir-96-P2b  Xla-Mir-96-P2c  Xla-Mir-96-P2d  Xtr-Mir-96-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)
NW_003114962.1: 37045-37105 [+]
Clustered miRNAs
(< 50kb from Mir-96-P2)
Mir-96-P3 NW_003114962.1: 34337-34398 [+]
Mir-96-P1 NW_003114962.1: 36626-36685 [+]
Mir-96-P2 NW_003114962.1: 37045-37105 [+]
Precursor
(pre-Mir +30nt flank)
UUUUGAAAAAAAAAACUGCUUUUCGUUGUGUUUGGCAAUAGAUAGAAUUCACACUGUGUACACUGAUCAGUGGUUCUGCUUUUGCCAACUACAGCGUGUAAGCGCGUUGUCAACGUGUUCC
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Structure
        10         20         30        40        50        60 
UUUUGAAAAAAAAAACU-    UU-|      U       U  A      U   ACUGUGUA 
                  GCUU   CGUUGUG UUGGCAA AG UAGAAU CAC        \
                  CGAA   GCGACAU AACCGUU UC GUCUUG GUG        C
CCUUGUGCAACUGUUGCG    UGU^      C       U  -      -   ACUAGUCA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Mature sequence

Sko-Mir-96-P2_5p

mirBase accessionMIMAT0009630
Sequence
0- UUUGGCAAUAGAUAGAAUUCACAC -24
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Star sequence

Sko-Mir-96-P2_3p* (predicted)

mirBase accessionNone
Sequence
39- GUGGUUCUGCUUUUGCCAACUA -61
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