Mir-96-P2b

MirGeneDB ID

Tni-Mir-96-P2b

Family name

MIR-96 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-96-P1a Tni-Mir-96-P1b Tni-Mir-96-P2a Tni-Mir-96-P3a Tni-Mir-96-P3b

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Loc-Mir-96-P2 Mal-Mir-96-P2b Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

13: 5039756-5039820 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2b)

Mir-96-P2b 13: 5039756-5039820 [-] UCSC Ensembl
Mir-96-P1b 13: 5039982-5040043 [-] UCSC Ensembl
Mir-96-P3b 13: 5040154-5040215 [-] UCSC Ensembl

Seed

UUGGCAA

Precursor
(pre-Mir +30nt flank)

CACGCAGAUCUGGCCUUCUCUCCCACAGUGUUUGGCAAUGGUAGAACUCACUCCGGUGGGUUAGAAGGAUCCGGUGGUUCUAGACUUGCCAACAACUGACCGAGAGCUGGAACCUCAGGAAGAGG

Get precursor sequence

Structure

        10          20        30        40        50        60  
CACGCAGAUCUGGCCUU--|    CCA    GU       UGG      U    CCGGUGGGU 
                   CUCUC   CAGU  UUGGCAA   UAGAAC CACU         U
                   GAGAG   GUCA  AACCGUU   AUCUUG GUGG         A
GGAGAAGGACUCCAAGGUC^    CCA    AC       CAG      -    CCUAGGAAG 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-96-P2b_5p

mirBase accession

None

Sequence

0- UUUGGCAAUGGUAGAACUCACU -22

Get sequence

Star sequence

Tni-Mir-96-P2b_3p* (predicted)

mirBase accession

None

Sequence

44- UGGUUCUAGACUUGCCAACAA -65

Get sequence