MirGeneDB

MirGeneDB ID

Pfl-Mir-96-P2

Family name MIR-96 (all species)
Seed UUGGCAA
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-96-P1  Pfl-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Bfl-Mir-96-P2a  Bfl-Mir-96-P2b  Bfl-Mir-96-P2c  Bge-Mir-96-P2  Bta-Mir-96-P2  Cbr-Mir-96-P2f  Cbr-Mir-96-P2g  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cgi-Mir-96-P2h  Cgi-Mir-96-P2i  Cin-Mir-96-P2  Cli-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dre-Mir-96-P2  Efe-Mir-96-P2d  Efe-Mir-96-P2e  Ete-Mir-96-P2  Gga-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lgi-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Oan-Mir-96-P2  Ocu-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD345584.1: 198298-198362 [-]
Precursor
(pre-Mir +30nt flank)
UGUUAACGUCACCUUGUGUCGUUGACUGUAUUUGGCAAUAGUUAGAAUUCACACUGUAUCUGAUAUGACGUCAGUGGUUCUAAUUUUGCCAAGUACAGCGUGCGAUAUCUGCACCGAGUUGUAGU
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Structure
        10          20        30        40        50        60   
UGUUAACGUCACCUUGU--|    UGA             U         U   ACUGUAUCUG 
                   GUCGU   CUGUAUUUGGCAA AGUUAGAAU CAC          \
                   UAGCG   GACAUGAACCGUU UUAAUCUUG GUG          A
UGAUGUUGAGCCACGUCUA^    UGC             -         -   ACUGCAGUAU 
   120       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Pt
Mature sequence

Pfl-Mir-96-P2_5p

MirBase accessionNone
Sequence
0- UUUGGCAAUAGUUAGAAUUCACA -23
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Star sequence

Pfl-Mir-96-P2_3p* (predicted)

MirBase accessionNone
Sequence
44- UGGUUCUAAUUUUGCCAAGUA -65
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